Probabilistic neural network for breast cancer classification

Among cancers, breast cancer causes second most number of deaths in women. To reduce the high number of unnecessary breast biopsies, several computer-aided diagnosis systems have been proposed in the last years. These systems help physicians in their decision to perform a breast biopsy on a suspicious lesion seen in a mammogram or to perform a short-term follow-up examination instead. In clinical diagnosis, the use of artificial intelligent techniques as neural networks has shown great potential in this field. In this paper, three classification algorithms, multi-layer perceptron (MLP), radial basis function (RBF) and probabilistic neural networks (PNN), are applied for the purpose of detection and classification of breast cancer. Decision making is performed in two stages: training the classifiers with features from Wisconsin Breast Cancer database and then testing. The performance of the proposed structure is evaluated in terms of sensitivity, specificity, accuracy and ROC. The results revealed that PNN was the best classifiers by achieving accuracy rates of 100 and 97.66 % in both training and testing phases, respectively. MLP was ranked as the second classifier and was capable of achieving 97.80 and 96.34 % classification accuracy for training and validation phases, respectively, using scaled conjugate gradient learning algorithm. However, RBF performed better than MLP in the training phase, and it has achieved the lowest accuracy in the validation phase.

[1]  Shigeo Abe DrEng Pattern Classification , 2001, Springer London.

[2]  M. J. D. Powell,et al.  Restart procedures for the conjugate gradient method , 1977, Math. Program..

[3]  C. Floyd,et al.  A neural network approach to breast cancer diagnosis as a constraint satisfaction problem. , 2001, Medical physics.

[4]  Paulo J. G. Lisboa,et al.  A Bayesian neural network approach for modelling censored data with an application to prognosis after surgery for breast cancer , 2003, Artif. Intell. Medicine.

[5]  Yuehjen E. Shao,et al.  Mining the breast cancer pattern using artificial neural networks and multivariate adaptive regression splines , 2004, Expert Syst. Appl..

[6]  Tulay Yildirim,et al.  BREAST CANCER DIAGNOSIS USING STATISTICAL NEURAL NETWORKS , 2004 .

[7]  Raouf N. Gorgui-Naguib,et al.  DNA ploidy and cell cycle distribution of breast cancer aspirate cells measured by image cytometry and analyzed by artificial neural networks for their prognostic significance , 1999, IEEE Transactions on Information Technology in Biomedicine.

[8]  R. Fletcher Practical Methods of Optimization , 1988 .

[9]  Hussein A. Abbass,et al.  An evolutionary artificial neural networks approach for breast cancer diagnosis , 2002, Artif. Intell. Medicine.

[10]  Niall Phelan,et al.  Comparison of digital mammography and screen-film mammography in breast cancer screening: a review in the Irish breast screening program. , 2009, AJR. American journal of roentgenology.

[11]  Alvaro L. Ronco,et al.  Use of artificial neural networks in modeling associations of discriminant factors: towards an intelligent selective breast cancer screening , 1999, Artif. Intell. Medicine.

[12]  Philip E. Gill,et al.  Practical optimization , 1981 .

[13]  O. Mangasarian,et al.  Pattern Recognition Via Linear Programming: Theory and Application to Medical Diagnosis , 1989 .

[14]  Lionel Tarassenko,et al.  Non‐linear survival analysis using neural networks , 2004, Statistics in medicine.

[15]  T. Balakumaran,et al.  Microcalcification detection in digital mammograms using novel filter bank , 2010, Biometrics Technology.

[16]  B. Boser,et al.  Backpropagation Learning for Multi-layer Feed-forward Neural Networks Using the Conjugate Gradient Method. Ieee Transactions on Neural Networks, 1991. [31] M. F. Mller. a Scaled Conjugate Gradient Algorithm for Fast Supervised Learning. Technical Report Pb-339 , 2007 .

[17]  M. Borga,et al.  Artificial Neural Networks in Medicine and Biology: Proceedings of the ANNIMAB-1 Conference, Göteborg, Sweden, 13–16 May 2000 , 2012 .

[18]  A. A. Safavi,et al.  Predicting breast cancer survivability using data mining techniques , 2010, 2010 2nd International Conference on Software Technology and Engineering.

[19]  Manaswini Padhan,et al.  An Extensive Survey on Artificial neural Network Based Cancer Prediction Using Soft-Computing Approach , 2011 .

[20]  L. Rybicki,et al.  Does ultrasound core breast biopsy predict histologic finding on excisional biopsy? , 2003, American journal of surgery.

[21]  Roberto Battiti,et al.  BFGS Optimization for Faster and Automated Supervised Learning , 1990 .

[22]  C. Floyd,et al.  Prediction of breast cancer malignancy using an artificial neural network , 1994, Cancer.

[23]  Kunio Doi,et al.  Computer-aided diagnosis in medical imaging: Historical review, current status and future potential , 2007, Comput. Medical Imaging Graph..

[24]  Graham Ball,et al.  A prototype methodology combining surface‐enhanced laser desorption/ionization protein chip technology and artificial neural network algorithms to predict the chemoresponsiveness of breast cancer cell lines exposed to Paclitaxel and Doxorubicin under in vitro conditions , 2003, Proteomics.

[25]  Martin Fodslette Meiller A Scaled Conjugate Gradient Algorithm for Fast Supervised Learning , 1993 .

[26]  K. Doi,et al.  Computer-aided diagnosis in radiology: potential and pitfalls. , 1999, European journal of radiology.

[27]  John P. Kerekes,et al.  Receiver Operating Characteristic Curve Confidence Intervals and Regions , 2008, IEEE Geoscience and Remote Sensing Letters.

[28]  Majid Ahmadi,et al.  An Efficient Automatic Mass Classification Method In Digitized Mammograms Using Artificial Neural Network , 2010, ArXiv.

[29]  Michael I. Jordan Why the logistic function? A tutorial discussion on probabilities and neural networks , 1995 .

[30]  R. Birdwell,et al.  Comparison of Digital Mammography and Screen-Film Mammography in Breast Cancer Screening: A Review in the Irish Breast Screening Program , 2010 .

[31]  M. Møller A Scaled Conjugate Gradient Algorithm for Fast Supervised Learning , 1990 .

[32]  Armando Freitas da Rocha,et al.  Neural Nets , 1992, Lecture Notes in Computer Science.

[33]  F. Harrell,et al.  Artificial neural networks improve the accuracy of cancer survival prediction , 1997, Cancer.

[34]  J. Goo,et al.  Receiver Operating Characteristic (ROC) Curve: Practical Review for Radiologists , 2004, Korean journal of radiology.

[35]  D. Signorini,et al.  Neural networks , 1995, The Lancet.

[36]  Lars Niklasson,et al.  Artificial Neural Networks in Medicine and Biology , 2000, Perspectives in Neural Computing.

[37]  Xinghua Liu,et al.  Diagnosis of Breast Tumours and Evaluation of Prognostic Risk by Using Machine Learning Approaches , 2007, ICIC.

[38]  Yahya H. Zweiri,et al.  A three-term backpropagation algorithm , 2003, Neurocomputing.

[39]  David G. Stork,et al.  Pattern Classification (2nd ed.) , 1999 .

[40]  A M Marchevsky,et al.  Reasoning with uncertainty in pathology: artificial neural networks and logistic regression as tools for prediction of lymph node status in breast cancer patients. , 1999, Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc.

[41]  William Nick Street,et al.  A Neural Network Model for Prognostic Prediction , 1998, ICML.

[42]  J. Padmavathi,et al.  A Comparative study on Breast Cancer Prediction Using RBF and MLP , 2011 .

[43]  Sheng Chen,et al.  Experiments with repeating weighted boosting search for optimization signal processing applications , 2005, IEEE Transactions on Systems, Man, and Cybernetics, Part B (Cybernetics).

[44]  E. Conant,et al.  A Review of Breast Ultrasound , 2006, Journal of Mammary Gland Biology and Neoplasia.

[45]  K R Usha Rani,et al.  Parallel Approach for Diagnosis of Breast Cancer using Neural Network Technique , 2010 .

[46]  Thomas G. Dietterich What is machine learning? , 2020, Archives of Disease in Childhood.

[47]  D. Plewes,et al.  Systematic Review: Using Magnetic Resonance Imaging to Screen Women at High Risk for Breast Cancer , 2008, Annals of Internal Medicine.

[48]  Boriana L. Milenova,et al.  Fuzzy and neural approaches in engineering , 1997 .

[49]  Amol P. Pande,et al.  Neural Network Aided Breast Cancer Detection and Diagnosis Using Support Vector Machine , 2006 .

[50]  Yue Hu,et al.  [Diagnostic application of serum protein pattern and artificial neural network software in breast cancer]. , 2005, Ai zheng = Aizheng = Chinese journal of cancer.

[51]  Drasko Furundzic,et al.  Neural networks approach to early breast cancer detection , 1998, J. Syst. Archit..

[52]  Earl M. Bednar Identification and Classification of Player Types in Massive Multiplayer Online Games Using Avatar Behavior , 2011 .

[53]  Li Lan,et al.  Evaluation of computer-aided diagnosis on a large clinical full-field digital mammographic dataset. , 2008, Academic radiology.

[54]  L. Mariani,et al.  Prognostic factors for metachronous contralateral breast cancer: A comparison of the linear Cox regression model and its artificial neural network extension , 1997, Breast Cancer Research and Treatment.

[55]  Farid U. Dowla,et al.  Backpropagation Learning for Multilayer Feed-Forward Neural Networks Using the Conjugate Gradient Method , 1991, Int. J. Neural Syst..

[56]  M. Yaffe,et al.  American Cancer Society Guidelines for Breast Screening with MRI as an Adjunct to Mammography , 2007 .

[57]  Michel Verleysen,et al.  Resampling methods for parameter-free and robust feature selection with mutual information , 2007, Neurocomputing.

[58]  David B. Fogel,et al.  Evolving artificial neural networks for screening features from mammograms , 1998, Artif. Intell. Medicine.

[59]  Guido Maria te Brake Computer aided detection of masses in digital mammograms , 2000 .

[60]  P. Snow,et al.  Introduction to artificial neural networks for physicians: Taking the lid off the black box , 2001, The Prostate.

[61]  Martin D. Buhmann,et al.  Radial Basis Functions: Theory and Implementations: Preface , 2003 .

[62]  Patrick van der Smagt,et al.  Introduction to neural networks , 1995, The Lancet.

[63]  Ellen Warner,et al.  The Role of Magnetic Resonance Imaging in Screening Women at High Risk of Breast Cancer , 2008, Topics in magnetic resonance imaging : TMRI.

[64]  B Angus,et al.  Prediction of nodal metastasis and prognosis in breast cancer: a neural model. , 1997, Anticancer research.

[65]  James L. McClelland,et al.  Parallel distributed processing: explorations in the microstructure of cognition, vol. 1: foundations , 1986 .

[66]  Heekuck Oh,et al.  Neural Networks for Pattern Recognition , 1993, Adv. Comput..

[67]  P Abdolmaleki,et al.  Feature extraction and classification of breast cancer on dynamic magnetic resonance imaging using artificial neural network. , 2001, Cancer letters.

[68]  John Scott Bridle,et al.  Probabilistic Interpretation of Feedforward Classification Network Outputs, with Relationships to Statistical Pattern Recognition , 1989, NATO Neurocomputing.

[69]  Donald F. Specht,et al.  Probabilistic neural networks , 1990, Neural Networks.

[70]  David G. Stork,et al.  Pattern Classification , 1973 .

[71]  Anupam Shukla,et al.  Diagnosis of breast cancer by modular evolutionary neural networks , 2011 .

[72]  Emily F Conant,et al.  Technical advances in breast ultrasound imaging. , 2006, Seminars in ultrasound, CT, and MR.

[73]  J V Tu,et al.  Advantages and disadvantages of using artificial neural networks versus logistic regression for predicting medical outcomes. , 1996, Journal of clinical epidemiology.

[74]  Werner Dubitzky,et al.  Multiclass Cancer Classification Using Gene Expression Profiling and Probabilistic Neural Networks , 2002, Pacific Symposium on Biocomputing.

[75]  Anupam Shukla,et al.  Breast cancer diagnosis using Artificial Neural Network models , 2010, The 3rd International Conference on Information Sciences and Interaction Sciences.

[76]  Duan Li,et al.  On Restart Procedures for the Conjugate Gradient Method , 2004, Numerical Algorithms.

[77]  L. Cantley,et al.  Altered metabolism in cancer , 2010, BMC Biology.

[78]  Anil K. Jain,et al.  Artificial Neural Networks: A Tutorial , 1996, Computer.

[79]  Magnus R. Hestenes,et al.  Conjugate Direction Methods in Optimization , 1980 .

[80]  D. Dowsett,et al.  Physics of diagnostic imaging , 1998 .

[81]  N. A. Diamantidis,et al.  Unsupervised stratification of cross-validation for accuracy estimation , 2000, Artif. Intell..

[82]  George Cybenko Neural networks in computational science and engineering , 1996 .

[83]  H. Joensuu,et al.  Artificial Neural Networks Applied to Survival Prediction in Breast Cancer , 1999, Oncology.

[84]  J. Trujillano,et al.  Aproximación metodológica al uso de redes neuronales artificiales para la predicción de resultados en medicina , 2004 .

[85]  H. A. Kestler,et al.  Prediction of the axillary lymph node status in mammary cancer on the basis of clinicopathological data and flow cytometry , 2004, Medical and Biological Engineering and Computing.

[86]  B. McAree,et al.  Breast cancer in women under 40 years of age: a series of 57 cases from Northern Ireland. , 2010, Breast.

[87]  P. Boyle,et al.  World Cancer Report 2008 , 2009 .

[88]  Alexandra Athanasiou,et al.  How to optimize breast ultrasound. , 2009, European journal of radiology.

[89]  G. Kokkinakis,et al.  Computer aided diagnosis of breast cancer in digitized mammograms. , 2002, Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society.

[90]  P M Ravdin,et al.  A prognostic model that makes quantitative estimates of probability of relapse for breast cancer patients. , 1999, Clinical cancer research : an official journal of the American Association for Cancer Research.

[91]  James A. Reggia,et al.  Neural computation in medicine , 1993, Artif. Intell. Medicine.

[92]  José Antonio Gómez-Ruiz,et al.  A combined neural network and decision trees model for prognosis of breast cancer relapse , 2003, Artif. Intell. Medicine.

[93]  W Penny,et al.  Neural Networks in Clinical Medicine , 1996, Medical decision making : an international journal of the Society for Medical Decision Making.

[94]  Yoshua Bengio,et al.  Pattern Recognition and Neural Networks , 1995 .

[95]  Maheza Irna Mohamad Salim,et al.  Development of breast cancer diagnosis tool using hybrid magnetoacoustic method and artificial neural network , 2012 .

[96]  P Abdolmaleki,et al.  Neural network analysis of breast cancer from MRI findings. , 1997, Radiation medicine.

[97]  R. Gaafar,et al.  Breast cancer in Egypt: a review of disease presentation and detection strategies. , 2003, Eastern Mediterranean health journal = La revue de sante de la Mediterranee orientale = al-Majallah al-sihhiyah li-sharq al-mutawassit.

[98]  Albert Sorribas,et al.  [Methodological approach to the use of artificial neural networks for predicting results in medicine]. , 2004, Medicina clinica.

[99]  Bo Yang,et al.  Hybrid Neurocomputing for Breast Cancer Detection , 2005, WSTST.