Single nucleotide polymorphism discovery in cutthroat trout subspecies using genome reduction, barcoding, and 454 pyro-sequencing
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P. J. Maughan | R. P. Evans | J. Kauwe | Ryan B Stinger | S. Smith | D. Shiozawa | Derek D. Houston | D. Elzinga
[1] R Core Team,et al. R: A language and environment for statistical computing. , 2014 .
[2] J. Austin,et al. Historical stocking data and 19th century DNA reveal human‐induced changes to native diversity and distribution of cutthroat trout , 2012, Molecular ecology.
[3] G. Luikart,et al. Development and evaluation of 200 novel SNP assays for population genetic studies of westslope cutthroat trout and genetic identification of related taxa , 2012, Molecular ecology resources.
[4] J. Garza,et al. Discovery and characterization of a large number of diagnostic markers to discriminate Oncorhynchus mykiss and O. clarkii , 2012, Molecular ecology resources.
[5] G. Luikart,et al. RAD sequencing yields a high success rate for westslope cutthroat and rainbow trout species‐diagnostic SNP assays , 2012, Molecular ecology resources.
[6] L. Bernatchez,et al. Dynamics of introgressive hybridization assessed by SNP population genomics of coding genes in stocked brook charr (Salvelinus fontinalis) , 2012, Molecular ecology.
[7] Theunis Piersma,et al. The interplay between habitat availability and population differentiation , 2012 .
[8] B. vonHoldt,et al. STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method , 2012, Conservation Genetics Resources.
[9] E. R. Keeley,et al. Watershed boundaries and geographic isolation: patterns of diversification in cutthroat trout from western North America , 2012, BMC Evolutionary Biology.
[10] E. Verspoor,et al. Detection and mapping of mtDNA SNPs in Atlantic salmon using high throughput DNA sequencing , 2011, BMC Genomics.
[11] D. Fairbanks,et al. Development, Characterization, and Linkage Mapping of Single Nucleotide Polymorphisms in the Grain Amaranths (Amaranthus sp.) , 2011 .
[12] S. Narum,et al. Development of 54 novel single‐nucleotide polymorphism (SNP) assays for sockeye and coho salmon and assessment of available SNPs to differentiate stocks within the Columbia River , 2011, Molecular ecology resources.
[13] T. Harkins,et al. Transcriptome sequencing and high‐resolution melt analysis advance single nucleotide polymorphism discovery in duplicated salmonids , 2011, Molecular ecology resources.
[14] R. Phillips,et al. A suite of twelve single nucleotide polymorphism markers for detecting introgression between cutthroat and rainbow trout , 2011, Molecular ecology resources.
[15] S. Kalinowski,et al. Diagnostic single nucleotide polymorphisms for identifying westslope cutthroat trout (Oncorhynchus clarki lewisi), Yellowstone cutthroat trout (Oncorhynchus clarkii bouvieri) and rainbow trout (Oncorhynchus mykiss) , 2011, Molecular ecology resources.
[16] Gordon Luikart,et al. Next‐generation RAD sequencing identifies thousands of SNPs for assessing hybridization between rainbow and westslope cutthroat trout , 2011, Molecular ecology resources.
[17] L. Bernatchez,et al. SNP signatures of selection on standing genetic variation and their association with adaptive phenotypes along gradients of ecological speciation in lake whitefish species pairs (Coregonus spp.) , 2011, Molecular ecology.
[18] J. Hemmer-Hansen,et al. Application of SNPs for population genetics of nonmodel organisms: new opportunities and challenges , 2011, Molecular ecology resources.
[19] M. Rubenfield,et al. Model SNP development for complex genomes based on hexaploid oat using high-throughput 454 sequencing technology , 2011, BMC Genomics.
[20] K. Saitoh,et al. Application of single nucleotide polymorphisms to non‐model species: a technical review , 2010, Molecular ecology resources.
[21] T. Joshi,et al. SNP discovery by high-throughput sequencing in soybean , 2010, BMC Genomics.
[22] L. Seeb,et al. High‐Resolution Melting Analysis for the Discovery of Novel Single‐Nucleotide Polymorphisms in Rainbow and Cutthroat Trout for Species Identification , 2010 .
[23] A. Boyko,et al. SNP identification, verification, and utility for population genetics in a non-model genus , 2010, BMC Genetics.
[24] Sébastien Renaut,et al. Mining transcriptome sequences towards identifying adaptive single nucleotide polymorphisms in lake whitefish species pairs (Coregonus spp. Salmonidae) , 2010, Molecular ecology.
[25] M. Metzker. Sequencing technologies — the next generation , 2010, Nature Reviews Genetics.
[26] Ramesh Ramakrishnan,et al. High-throughput single nucleotide polymorphism genotyping using nanofluidic Dynamic Arrays , 2009, BMC Genomics.
[27] J. Yao,et al. Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library , 2009, BMC Genomics.
[28] J. Udall,et al. SNP Discovery via Genomic Reduction, Barcoding, and 454‐Pyrosequencing in Amaranth , 2009 .
[29] W. Wilson,et al. Phylogenetic analysis of the Pacific cutthroat trout (Oncorhynchus clarki ssp.: Salmonidae) based on partial mtDNA ND4 sequences: a closer look at the highly fragmented inland species. , 2009, Molecular phylogenetics and evolution.
[30] B. May,et al. Six diagnostic single nucleotide polymorphism markers for detecting introgression between cutthroat and rainbow trouts , 2009, Molecular ecology resources.
[31] J. Jackson,et al. Next-generation pyrosequencing of gonad transcriptomes in the polyploid lake sturgeon (Acipenser fulvescens): the relative merits of normalization and rarefaction in gene discovery , 2009, BMC Genomics.
[32] A. Snoj,et al. A set of nuclear DNA markers diagnostic for marble trout, Salmo marmoratus , 2008 .
[33] A. Elz,et al. Differentiating salmon populations at broad and fine geographical scales with microsatellites and single nucleotide polymorphisms , 2008, Molecular ecology.
[34] J. Garza,et al. Isolation of 15 single nucleotide polymorphisms from coastal steelhead, Oncorhynchus mykiss (Salmonidae) , 2008, Molecular ecology resources.
[35] P. Trotter,et al. The Case for Humboldtensis: A Subspecies Name for the Indigenous Cutthroat Trout (Oncorhynchus clarkii) of the Humboldt River, Upper Quinn River, and Coyote Basin Drainages, Nevada and Oregon , 2008 .
[36] Sarah C. Goslee,et al. The ecodist Package for Dissimilarity-based Analysis of Ecological Data , 2007 .
[37] D. Huson,et al. Application of phylogenetic networks in evolutionary studies. , 2006, Molecular biology and evolution.
[38] E. P. Pister. Trout and Salmon of North America , 2005, Copeia.
[39] J. Rinne,et al. Native trout of western North America , 1992, Reviews in Fish Biology and Fisheries.
[40] D. Nickerson,et al. The utility of single nucleotide polymorphisms in inferences of population history , 2003 .
[41] D. Madsen,et al. Great basin aquatic systems history , 2002 .
[42] Jerald B. Johnson. EVOLUTION AFTER THE FLOOD: PHYLOGEOGRAPHY OF THE DESERT FISH UTAH CHUB , 2002, Evolution; international journal of organic evolution.
[43] Joseph R. Tomelleri,et al. Trout and Salmon of North America , 2002 .
[44] P. Donnelly,et al. Inference of population structure using multilocus genotype data. , 2000, Genetics.
[45] David P. Bouchard,et al. Quaternary history of the Thatcher Basin, Idaho, reconstructed from the 87Sr/86Sr and amino acid composition of lacustrine fossils: implications for the diversion of the Bear River into the Bonneville Basin , 1998 .
[46] M. R. Montgomery. Many Rivers to Cross: Of Good Running Water, Native Trout, and the Remains Of Wilderness , 1995 .
[47] F. Allendorf,et al. Conservation and Distribution of Genetic Variation in a Polytypic Species, the Cutthroat Trout , 1988 .
[48] P. Trotter. Cutthroat: Native Trout of the West , 1987 .
[49] Eric J. Loudenslager,et al. ELECTROPHORETIC STUDY OF CUTTHROAT TROUT POPULATIONS IN UTAH , 1985 .
[50] R. Naiman,et al. Fishes in North American deserts , 1982 .
[51] G. Gall,et al. Introgressive Hybridization in Populations of Paiute Cutthroat Trout (Salmo clarki seleniris) , 1981 .
[52] Eric J. Loudenslager,et al. Geographic Patterns of Protein Variation and Subspeciation in Cutthroat Trout, Salmo Clarki , 1980 .
[53] H. Malde,et al. The catastrophic late Pleistocene Bonneville flood in the Snake River Plain, Idaho , 1968 .
[54] C. B. van Niel. Microbiology and Molecular Biology , 1966, The Quarterly Review of Biology.