Art is long and time is fleeting: the current problems and future prospects for time-resolved enzyme crystallography

I offer comments on the challenges and problems of the future based on the papers in this volume. First, the requirement of the Laue technique for a very well-ordered crystal is a major obstacle to many studies. Efforts to ease this problem are needed. Secondly, the fundamental issues in time-resolved crystallography are now chemical rather than crystallographic. Methods for the rapid initiation of many reactions must be developed. Thirdly, it is imperative that the kinetics of the process in question be studied in the crystal before any diffraction experiments are done. We need better ways to make those solid state kinetic measurements. Fourthly, we should make use of combined methods, such as cryoenzymology plus Laue diffraction or site-directed mutagenesis plus Laue diffraction, to bring many processes into the time regime in which we currently can work. Fifthly, we have to be able to deconvolute diffraction data that come from a mixture of two or three discrete species. Finally, no matter how powerful our synchrotrons get, it seems to me that some of the most important events in any enzymatic reaction are not going to be accessible: consider the formation and decomposition of a transition state as an example. I close by discussing the role of computational biochemistry in filling in those frames of our enzymatic movie that we cannot observe directly by time-resolved X-ray crystallography.

[1]  H. Hope Cryocrystallography of biological macromolecules: a generally applicable method. , 1988, Acta crystallographica. Section B, Structural science.

[2]  J. Hajdu,et al.  Catalysis in the crystal: synchrotron radiation studies with glycogen phosphorylase b. , 1987, The EMBO journal.

[3]  I. J. Clifton,et al.  Experimental strategies in Laue crystallography , 1991 .

[4]  I. Schlichting,et al.  Biochemical and crystallographic characterization of a complex of c-Ha-ras p21 and caged GTP with flash photolysis. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[5]  J. Knowles,et al.  Active site of triosephosphate isomerase: in vitro mutagenesis and characterization of an altered enzyme. , 1985, Proceedings of the National Academy of Sciences of the United States of America.

[6]  Steven C. Almo,et al.  Time-resolved X-ray crystallographic study of the conformational change in Ha-Ras p21 protein on GTP hydrolysis , 1990, Nature.

[7]  D W Banner,et al.  On the three-dimensional structure and catalytic mechanism of triose phosphate isomerase. , 1981, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

[8]  G A Petsko,et al.  Protein crystallography at sub-zero temperatures: cryo-protective mother liquors for protein crystals. , 1975, Journal of molecular biology.

[9]  M Karplus,et al.  Computer simulation and analysis of the reaction pathway of triosephosphate isomerase. , 1991, Biochemistry.

[10]  G. Petsko,et al.  Structure of iron superoxide dismutase from Pseudomonas ovalis at 2.9-A resolution. , 1983, Proceedings of the National Academy of Sciences of the United States of America.

[11]  D. Blow,et al.  Mechanism for aldose-ketose interconversion by D-xylose isomerase involving ring opening followed by a 1,2-hydride shift. , 1993, Journal of molecular biology.

[12]  Steven C. Almo,et al.  On the limitations of the Laue method when applied to crystals of macromolecules , 1992 .

[13]  R. Liddington,et al.  Structure of simian virus 40 at 3.8-Å resolution , 1991, Nature.

[14]  G. Petsko [12] Flow cell construction and use , 1985 .

[15]  A. North,et al.  Crystallographic studies of the activity of hen egg-white lysozyme , 1967, Proceedings of the Royal Society of London. Series B. Biological Sciences.

[16]  G A Petsko,et al.  Crystallographic studies of the mechanism of xylose isomerase. , 1989, Biochemistry.

[17]  G. Petsko,et al.  Crystallographic studies of chicken triose phosphate isomerase. , 1972, Cold Spring Harbor symposia on quantitative biology.

[18]  K. Moffat,et al.  LAUE DIFFRACTION FROM PROTEIN CRYSTALS USING A SEALED-TUBE X-RAY SOURCE , 1991 .

[19]  G. Petsko,et al.  Conformational substates in a protein: structure and dynamics of metmyoglobin at 80 K. , 1982, Proceedings of the National Academy of Sciences of the United States of America.

[20]  D. Phillips Protein crystallography 1971: coming of age. , 1972, Cold Spring Harbor symposia on quantitative biology.

[21]  F. Richards,et al.  INTERMOLECULAR CROSS LINKING OF A PROTEIN IN THE CRYSTALLINE STATE: CARBOXYPEPTIDASE-A. , 1964, Proceedings of the National Academy of Sciences of the United States of America.

[22]  M. Karplus,et al.  A combined quantum mechanical and molecular mechanical potential for molecular dynamics simulations , 1990 .

[23]  G. Petsko,et al.  Triosephosphate isomerase: removal of a putatively electrophilic histidine residue results in a subtle change in catalytic mechanism. , 1988, Biochemistry.

[24]  G. Petsko,et al.  Observation of the light-triggered binding of pyrone to chymotrypsin by Laue x-ray crystallography. , 1991, Proceedings of the National Academy of Sciences of the United States of America.