Diverse Asgard archaea including the novel phylum Gerdarchaeota participate in organic matter degradation
暂无分享,去创建一个
Meng Li | Yuchun Yang | M. Friedrich | Zhichao Zhou | Yang Liu | Jie Pan | J. Gu | Mingwei Cai | Tim Richter-Heitmann | Xiuran Yin | R. Nimzyk | Ajinkya C. Kulkarni | Xiaowen Wang | Wenjin Li
[1] R. Amils. Asgard, Archaea , 2021, Encyclopedia of Astrobiology.
[2] M. Li,et al. Genome- and Community-Level Interaction Insights into Carbon Utilization and Element Cycling Functions of Hydrothermarchaeota in Hydrothermal Sediment , 2020, mSystems.
[3] Filipa L. Sousa,et al. Metagenomes from Coastal Marine Sediments Give Insights into the Ecological Role and Cellular Features of Loki- and Thorarchaeota , 2019, mBio.
[4] M. Li,et al. Prokaryotic Diversity in Mangrove Sediments across Southeastern China Fundamentally Differs from That in Other Biomes , 2019, mSystems.
[5] Takashi Yamaguchi,et al. Isolation of an archaeon at the prokaryote–eukaryote interface , 2019, Nature.
[6] Fengping Wang,et al. Metal-dependent anaerobic methane oxidation in marine sediment: Insights from marine settings and other systems , 2019, Science China Life Sciences.
[7] B. Baker,et al. New Microbial Lineages Capable of Carbon Fixation and Nutrient Cycling in Deep-Sea Sediments of the Northern South China Sea , 2019, Applied and Environmental Microbiology.
[8] A. Spang,et al. Asgard archaea capable of anaerobic hydrocarbon cycling , 2019, Nature Communications.
[9] A. Spang,et al. Proposal of the reverse flow model for the origin of the eukaryotic cell based on comparative analyses of Asgard archaeal metabolism , 2019, Nature Microbiology.
[10] O. Béjà,et al. Casting light on Asgardarchaeota metabolism in a sunlit microoxic niche , 2019, Nature Microbiology.
[11] M. Friedrich,et al. CO2 conversion to methane and biomass in obligate methylotrophic methanogens in marine sediments , 2019, bioRxiv.
[12] M. Li,et al. Vertical Distribution of Bathyarchaeotal Communities in Mangrove Wetlands Suggests Distinct Niche Preference of Bathyarchaeota Subgroup 6 , 2019, Microbial Ecology.
[13] M. Li,et al. Genomic and transcriptomic insights into the ecology and metabolism of benthic archaeal cosmopolitan, Thermoprofundales (MBG-D archaea) , 2018, The ISME Journal.
[14] Donovan H. Parks,et al. A phylogenomic and ecological analysis of the globally abundant Marine Group II archaea (Ca. Poseidoniales ord. nov.) , 2018, The ISME Journal.
[15] Volker Müller,et al. Electron Bifurcation: A Long-Hidden Energy-Coupling Mechanism. , 2018, Annual review of microbiology.
[16] Cindy J. Castelle,et al. Genomic inference of the metabolism and evolution of the archaeal phylum Aigarchaeota , 2018, Nature Communications.
[17] Itai Sharon,et al. A distinct abundant group of microbial rhodopsins discovered using functional metagenomics , 2018, Nature.
[18] Alexander J Probst,et al. Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy , 2017, Nature Microbiology.
[19] W. Inskeep,et al. Marsarchaeota are an aerobic archaeal lineage abundant in geothermal iron oxide microbial mats , 2018, Nature Microbiology.
[20] Lonnie D. Crosby,et al. Phylogenetically Novel Uncultured Microbial Cells Dominate Earth Microbiomes , 2018, mSystems.
[21] P. Forterre,et al. Asgard archaea do not close the debate about the universal tree of life topology , 2018, PLoS genetics.
[22] M. Li,et al. Two or three domains: a new view of tree of life in the genomics era , 2018, Applied Microbiology and Biotechnology.
[23] Eunsoo Kim,et al. Gene-based predictive models of trophic modes suggest Asgard archaea are not phagocytotic , 2018, Nature Ecology & Evolution.
[24] B. Baker,et al. Comparative genomic inference suggests mixotrophic lifestyle for Thorarchaeota , 2018, The ISME Journal.
[25] H. Atomi,et al. A primordial and reversible TCA cycle in a facultatively chemolithoautotrophic thermophile , 2018, Science.
[26] Tom O. Delmont,et al. Linking pangenomes and metagenomes: the Prochlorococcus metapangenome , 2018, PeerJ.
[27] M. Li,et al. Stratified Bacterial and Archaeal Community in Mangrove and Intertidal Wetland Mudflats Revealed by High Throughput 16S rRNA Gene Sequencing , 2017, Front. Microbiol..
[28] Thijs J. G. Ettema,et al. Genomic exploration of the diversity, ecology, and evolution of the archaeal domain of life , 2017, Science.
[29] P. Forterre,et al. Lokiarchaea are close relatives of Euryarchaeota, not bridging the gap between prokaryotes and eukaryotes , 2017, PLoS genetics.
[30] Thijs J. G. Ettema,et al. Asgard archaea illuminate the origin of eukaryotic cellular complexity , 2017, Nature.
[31] S. Akanuma,et al. Birth of Archaeal Cells: Molecular Phylogenetic Analyses of G1P Dehydrogenase, G3P Dehydrogenases, and Glycerol Kinase Suggest Derived Features of Archaeal Membranes Having G1P Polar Lipids , 2016, Archaea.
[32] Luis Pedro Coelho,et al. Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper , 2016, bioRxiv.
[33] Dianne K. Newman,et al. The physiology of growth arrest: uniting molecular and environmental microbiology , 2016, Nature Reviews Microbiology.
[34] Filipe M. Sousa,et al. Exploring membrane respiratory chains. , 2016, Biochimica et biophysica acta.
[35] Filipa L. Sousa,et al. Lokiarchaeon is hydrogen dependent , 2016, Nature Microbiology.
[36] M. Kanehisa,et al. BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences. , 2016, Journal of molecular biology.
[37] B. Baker,et al. Genomic reconstruction of a novel, deeply branched sediment archaeal phylum with pathways for acetogenesis and sulfur reduction , 2016, The ISME Journal.
[38] B. Baker,et al. Genomic and transcriptomic evidence for scavenging of diverse organic compounds by widespread deep-sea archaea , 2015, Nature Communications.
[39] Neil D. Rawlings,et al. Twenty years of the MEROPS database of proteolytic enzymes, their substrates and inhibitors , 2015, Nucleic Acids Res..
[40] C. Jackson,et al. Genomic and metagenomic surveys of hydrogenase distribution indicate H2 is a widely utilised energy source for microbial growth and survival , 2015, The ISME Journal.
[41] Dongwan D. Kang,et al. MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities , 2015, PeerJ.
[42] E. Bergantino,et al. [NiFe]-hydrogenase is essential for cyanobacterium Synechocystis sp. PCC 6803 aerobic growth in the dark , 2015, Scientific Reports.
[43] Connor T. Skennerton,et al. CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes , 2015, Genome research.
[44] J. W. Peters,et al. [FeFe]- and [NiFe]-hydrogenase diversity, mechanism, and maturation. , 2015, Biochimica et biophysica acta.
[45] Thijs J. G. Ettema,et al. Complex archaea that bridge the gap between prokaryotes and eukaryotes , 2015, Nature.
[46] Yong Zhang,et al. Shallow-ocean methane leakage and degassing to the atmosphere: triggered by offshore oil-gas and methane hydrate explorations , 2015, Front. Mar. Sci..
[47] A. von Haeseler,et al. IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies , 2014, Molecular biology and evolution.
[48] Matthew Fraser,et al. InterProScan 5: genome-scale protein function classification , 2014, Bioinform..
[49] C. Schleper,et al. Quantitative and phylogenetic study of the Deep Sea Archaeal Group in sediments of the Arctic mid-ocean spreading ridge , 2013, Front. Microbiol..
[50] Virginia P. Edgcomb,et al. Gene expression in the deep biosphere , 2013, Nature.
[51] S. Eddy,et al. Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions , 2013, Nucleic acids research.
[52] Hélène Touzet,et al. SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data , 2012, Bioinform..
[53] T. Miyatake,et al. Depth-Related Differences in Organic Substrate Utilization by Major Microbial Groups in Intertidal Marine Sediment , 2012, Applied and Environmental Microbiology.
[54] T. J. Smith,et al. Organic carbon burial rates in mangrove sediments: Strengthening the global budget , 2012 .
[55] Siu-Ming Yiu,et al. IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth , 2012, Bioinform..
[56] A. Teske,et al. Archaea in Organic-Lean and Organic-Rich Marine Subsurface Sediments: An Environmental Gradient Reflected in Distinct Phylogenetic Lineages , 2012, Front. Microbio..
[57] Sergey I. Nikolenko,et al. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing , 2012, J. Comput. Biol..
[58] Elmar Pruesse,et al. SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes , 2012, Bioinform..
[59] Carlos M. Duarte,et al. A blueprint for blue carbon: toward an improved understanding of the role of vegetated coastal habitats in sequestering CO2 , 2011 .
[60] Sean R. Eddy,et al. Accelerated Profile HMM Searches , 2011, PLoS Comput. Biol..
[61] N. Marbà,et al. Seagrass sediments as a global carbon sink: Isotopic constraints , 2010 .
[62] Alexis Criscuolo,et al. BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments , 2010, BMC Evolutionary Biology.
[63] Martin Ester,et al. PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes , 2010, Bioinform..
[64] Miriam L. Land,et al. Trace: Tennessee Research and Creative Exchange Prodigal: Prokaryotic Gene Recognition and Translation Initiation Site Identification Recommended Citation Prodigal: Prokaryotic Gene Recognition and Translation Initiation Site Identification , 2022 .
[65] Richard Durbin,et al. Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .
[66] Konstantinos D. Tsirigos,et al. Prediction of signal peptides in archaea. , 2008, Protein engineering, design & selection : PEDS.
[67] Suzanne M. Paley,et al. The MetaCyc database of metabolic pathways and enzymes , 2017, Nucleic Acids Res..
[68] D. Burdige. Preservation of organic matter in marine sediments: controls, mechanisms, and an imbalance in sediment organic carbon budgets? , 2007, Chemical reviews.
[69] Rika Anderson,et al. Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[70] K. Nealson,et al. Microbial Communities Associated with Geological Horizons in Coastal Subseafloor Sediments from the Sea of Okhotsk , 2003, Applied and Environmental Microbiology.
[71] K. Horikoshi,et al. Archaeology of Archaea: geomicrobiological record of Pleistocene thermal events concealed in a deep-sea subseafloor environment , 2001, Extremophiles.
[72] C. Vetriani,et al. Population Structure and Phylogenetic Characterization of Marine Benthic Archaea in Deep-Sea Sediments , 1999, Applied and Environmental Microbiology.
[73] K. Horikoshi,et al. Genetic diversity of archaea in deep-sea hydrothermal vent environments. , 1999, Genetics.
[74] D. Kelleher,et al. The essential OST2 gene encodes the 16-kD subunit of the yeast oligosaccharyltransferase, a highly conserved protein expressed in diverse eukaryotic organisms , 1995, The Journal of cell biology.
[75] J. Kristjánsson,et al. Acidianus infernus gen. nov., sp. nov., and Acidianus brierleyi Comb. nov.: Facultatively Aerobic, Extremely Acidophilic Thermophilic Sulfur-Metabolizing Archaebacteria , 1986 .
[76] B. Jørgensen,et al. A comparison of oxygen, nitrate, and sulfate respiration in coastal marine sediments , 1979, Microbial Ecology.
[77] B. Mcguinness,et al. Twenty years on. , 1976, British medical journal.
[78] Seweryn Malgorzata,et al. to Primordial , 2018 .
[79] J. Damsté,et al. Phylogenomic analysis of lipid biosynthetic genes of Archaea shed light on the ‘lipid divide’ , 2017, Environmental microbiology.
[80] Y. Konishi,et al. Kinetics of the Bioleaching of Chalcopyrite Concentrate by Acidophilic Thermophile Acidianus brierleyi , 1999, Biotechnology progress.