Embryonic Stem Cell Specific MicroRNAs Regulate the G1/S Transition and Promote Rapid Proliferation

Dgcr8 knockout embryonic stem (ES) cells lack microprocessor activity and hence all canonical microRNAs (miRNAs). These cells proliferate slowly and accumulate in G1 phase of the cell cycle. Here, by screening a comprehensive library of individual miRNAs in the background of the Dgcr8 knockout ES cells, we report that multiple ES cell–specific miRNAs, members of the miR-290 family, rescue the ES cell proliferation defect. Furthermore, rescued cells no longer accumulate in the G1 phase of the cell cycle. These miRNAs function by suppressing several key regulators of the G1-S transition. These results show that post-transcriptional regulation by miRNAs promotes the G1-S transition of the ES cell cycle, enabling rapid proliferation of these cells. Our screening strategy provides an alternative and powerful approach for uncovering the role of individual miRNAs in biological processes, as it overcomes the common problem of redundancy and saturation in the miRNA system.

[1]  L. Lim,et al.  MicroRNAs in the miR-106b Family Regulate p21/CDKN1A and Promote Cell Cycle Progression , 2008, Molecular and Cellular Biology.

[2]  C. Burge,et al.  Conserved Seed Pairing, Often Flanked by Adenosines, Indicates that Thousands of Human Genes are MicroRNA Targets , 2005, Cell.

[3]  S. Moon,et al.  Human embryonic stem cells express a unique set of microRNAs. , 2004, Developmental biology.

[4]  C. Burge,et al.  Prediction of Mammalian MicroRNA Targets , 2003, Cell.

[5]  Gene W Yeo,et al.  RNA sequence analysis defines Dicer's role in mouse embryonic stem cells , 2007, Proceedings of the National Academy of Sciences.

[6]  Oliver H. Tam,et al.  Characterization of Dicer-deficient murine embryonic stem cells. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[7]  S. Dalton,et al.  Cell cycle control of embryonic stem cells , 2007, Stem Cell Reviews.

[8]  J. Kato Induction of S phase by G1 regulatory factors. , 1999, Frontiers in bioscience : a journal and virtual library.

[9]  Duncan Walker,et al.  Pluripotent cell division cycles are driven by ectopic Cdk2, cyclin A/E and E2F activities , 2002, Oncogene.

[10]  Mariette Schrier,et al.  A Genetic Screen Implicates miRNA-372 and miRNA-373 As Oncogenes in Testicular Germ Cell Tumors , 2006, Cell.

[11]  Mong-Hong Lee,et al.  Regulators of G1 cyclin–dependent kinases and cancers , 2003, Cancer and Metastasis Reviews.

[12]  W. Tao,et al.  Lats2, a putative tumor suppressor, inhibits G1/S transition , 2003, Oncogene.

[13]  Y. Sun,et al.  Defining embryonic stem cell identity using differentiation-related microRNAs and their potential targets , 2007, Mammalian Genome.

[14]  G. Hannon,et al.  A mammalian microRNA cluster controls DNA methylation and telomere recombination via Rbl2-dependent regulation of DNA methyltransferases , 2008, Nature Structural &Molecular Biology.

[15]  P. Sharp,et al.  Embryonic stem cell-specific MicroRNAs. , 2003, Developmental cell.

[16]  H. Ruohola-Baker,et al.  The MicroRNA Pathway Plays a Regulatory Role in Stem Cell Division , 2006, Cell cycle.

[17]  Rudolf Jaenisch,et al.  DGCR8 is essential for microRNA biogenesis and silencing of embryonic stem cell self-renewal , 2007, Nature Genetics.

[18]  V. Ambros microRNAs Tiny Regulators with Great Potential , 2001, Cell.

[19]  P. Savatier,et al.  Withdrawal of differentiation inhibitory activity/leukemia inhibitory factor up-regulates D-type cyclins and cyclin-dependent kinase inhibitors in mouse embryonic stem cells. , 1996, Oncogene.

[20]  M. Zavolan,et al.  MicroRNAs control de novo DNA methylation through regulation of transcriptional repressors in mouse embryonic stem cells , 2008, Nature Structural &Molecular Biology.

[21]  D. Bartel MicroRNAs Genomics, Biogenesis, Mechanism, and Function , 2004, Cell.

[22]  G. Keller,et al.  Embryonic stem cell differentiation: emergence of a new era in biology and medicine. , 2005, Genes & development.

[23]  Austin G Smith,et al.  Signalling, cell cycle and pluripotency in embryonic stem cells. , 2002, Trends in cell biology.

[24]  R. Jaenisch,et al.  Regulation of ES cell differentiation by functional and conformational modulation of p53 , 1997, The EMBO journal.

[25]  Lin He,et al.  MicroRNAs: small RNAs with a big role in gene regulation , 2004, Nature Reviews Genetics.

[26]  S. Dalton,et al.  Developmental activation of the Rb-E2F pathway and establishment of cell cycle-regulated cyclin-dependent kinase activity during embryonic stem cell differentiation. , 2005, Molecular biology of the cell.

[27]  L. Campagnolo,et al.  Comparative transcript profiles of cell cycle-related genes in mouse primordial germ cells, embryonic stem cells and embryonic germ cells. , 2007, Gene expression patterns : GEP.

[28]  Lin He,et al.  MicroRNAs: small RNAs with a big role in gene regulation , 2004, Nature reviews genetics.

[29]  Rudolf Jaenisch,et al.  Characterization of a highly variable eutherian microRNA gene. , 2005, RNA.