Ultrasensitive detection of low-abundance surface-marker protein using isothermal rolling circle amplification in a microfluidic nanoliter platform.

With advances in immunology and cancer biology, there is an unmet need for increasingly sensitive systems to monitor the expression of specific cell markers for the development of new diagnostic and therapeutic tools. To address this challenge, a highly sensitive labeling method that translates antigen-antibody recognition processes into DNA detection events that can be greatly amplified via isothermal rolling circle amplification (RCA) is applied. By merging the single-molecule detection power of RCA reactions with microfluidic technology, it is demonstrated that the identification of specific protein markers can be achieved on tumor-cell surfaces in miniaturized nanoliter reaction droplets. Furthermore, this combined approach of signal amplification in a microfluidic format could extend the utility of existing methods by reducing sample and reagent consumption and enhancing the sensitivities and specificities for various applications, including early diagnosis of cancer.

[1]  D. Krag,et al.  Enrichment with anti-cytokeratin alone or combined with anti-EpCAM antibodies significantly increases the sensitivity for circulating tumor cell detection in metastatic breast cancer patients , 2008, Breast Cancer Research.

[2]  D. Walt,et al.  Microsphere-based rolling circle amplification microarray for the detection of DNA and proteins in a single assay. , 2009, Analytical chemistry.

[3]  Margarita Salas,et al.  Insights into strand displacement and processivity from the crystal structure of the protein-primed DNA polymerase of bacteriophage phi29. , 2004, Molecular cell.

[4]  A. Abate,et al.  Ultrahigh-throughput screening in drop-based microfluidics for directed evolution , 2010, Proceedings of the National Academy of Sciences.

[5]  Helene Andersson-Svahn,et al.  Detection and analysis of low-abundance cell-surface biomarkers using enzymatic amplification in microfluidic droplets. , 2009, Angewandte Chemie.

[6]  Fredrik Dahl,et al.  Padlock and Proximity Probes for in Situ and Array-Based Analyses: Tools for the Post-Genomic Era , 2003, Comparative and functional genomics.

[7]  H. Zola,et al.  Detection of low-abundance membrane markers by immunofluorescence--a comparison of alternative high-sensitivity methods and reagents. , 2004, Journal of immunological methods.

[8]  G. Sauter,et al.  High Ep-CAM Expression is Associated with Poor Prognosis in Node-positive Breast Cancer , 2004, Breast Cancer Research and Treatment.

[9]  Christoph A. Merten,et al.  Drop-based microfluidic devices for encapsulation of single cells. , 2008, Lab on a chip.

[10]  J L Sussman,et al.  Three-dimensional structures of avidin and the avidin-biotin complex. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[11]  S. Digumarthy,et al.  Isolation of rare circulating tumour cells in cancer patients by microchip technology , 2007, Nature.

[12]  Mats Nilsson,et al.  Homogeneous amplified single-molecule detection: Characterization of key parameters. , 2007, Analytical biochemistry.

[13]  N. Broude,et al.  High-density fluorescently labeled rolling-circle amplicons for DNA diagnostics. , 2005, Analytical biochemistry.

[14]  Synthesis and stretching of rolling circle amplification products in a flow-through system. , 2009, Small.

[15]  Bill W Colston,et al.  High-throughput quantitative polymerase chain reaction in picoliter droplets. , 2008, Analytical chemistry.

[16]  Mats Nilsson,et al.  Digital quantification using amplified single-molecule detection , 2006, Nature Methods.

[17]  M. Nilsson Lock and roll: single-molecule genotyping in situ using padlock probes and rolling-circle amplification , 2006, Histochemistry and Cell Biology.

[18]  P. Hewett,et al.  Identification of tumour-induced changes in endothelial cell surface protein expression: an in vitro model. , 2001, The international journal of biochemistry & cell biology.

[19]  R. Schneider,et al.  Cell Surface Analysis Techniques: What Do Cell Preparation Protocols Do to Cell Surface Properties? , 1999, Applied and Environmental Microbiology.

[20]  D. Kaplan,et al.  Enzymatic amplification staining for flow cytometric analysis of cell surface molecules. , 2000, Cytometry.