Process Calculi, Systems Biology and Artificial Chemistry
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[1] Roberto Gorrieri,et al. On the Computational Power of Brane Calculi , 2006, Trans. Comp. Sys. Biology.
[2] Marta Z. Kwiatkowska,et al. Using probabilistic model checking in systems biology , 2008, PERV.
[3] J. Hillston. The nature of synchronisation , 1994 .
[4] Gordon D. Plotkin,et al. A structural approach to operational semantics , 2004, J. Log. Algebraic Methods Program..
[5] François Fages,et al. BIOCHAM: an environment for modeling biological systems and formalizing experimental knowledge , 2006, Bioinform..
[6] R. Fleischmann,et al. The Minimal Gene Complement of Mycoplasma genitalium , 1995, Science.
[7] J. Bergstra,et al. Handbook of Process Algebra , 2001 .
[8] M. Magnasco. CHEMICAL KINETICS IS TURING UNIVERSAL , 1997 .
[9] Corrado Priami,et al. Transactions on Computational Systems Biology VI , 2006, Trans. Computational Systems Biology.
[10] Matthew Cook,et al. Computation with finite stochastic chemical reaction networks , 2008, Natural Computing.
[11] Robin Milner,et al. Communicating and mobile systems - the Pi-calculus , 1999 .
[12] Giorgio Bacci,et al. Modal Logics for Brane Calculus , 2006, CMSB.
[13] Corrado Priami,et al. Effective Index: a formal measure of drug effects , 2007 .
[14] Andrea Bracciali,et al. Synapses as stochastic concurrent systems , 2008, Theor. Comput. Sci..
[15] Andrew Hinton,et al. PRISM: A Tool for Automatic Verification of Probabilistic Systems , 2006, TACAS.
[16] Gheorghe Paun,et al. Spiking Neural P Systems: an Early Survey , 2007, Int. J. Found. Comput. Sci..
[17] E. Shapiro,et al. Cellular abstractions: Cells as computation , 2002, Nature.
[18] Robert K. Brayton,et al. Model-checking continuous-time Markov chains , 2000, TOCL.
[19] Gordon Broderick,et al. Extraction of elementary rate constants from global network analysis of E. coli central metabolism , 2008, BMC Systems Biology.
[20] Gregory D. Smith. Modeling the Stochastic Gating of Ion Channels , 2002 .
[21] Marco Bernardo,et al. Formal Methods for Computational Systems Biology, 8th International School on Formal Methods for the Design of Computer, Communication, and Software Systems, SFM 2008, Bertinoro, Italy, June 2-7, 2008, Advanced Lectures , 2008, SFM.
[22] Luca Cardelli,et al. On process rate semantics , 2008, Theor. Comput. Sci..
[23] Luca Cardelli,et al. On the Computational Power of Biochemistry , 2008, AB.
[24] Roger Brent,et al. Automatic generation of cellular reaction networks with Moleculizer 1.0 , 2005, Nature Biotechnology.
[25] François Fages,et al. Formal Cell Biology in Biocham , 2008, SFM.
[26] Robin Milner,et al. A Calculus of Mobile Processes, II , 1992, Inf. Comput..
[27] Lawrence C. Paulson,et al. The foundation of a generic theorem prover , 1989, Journal of Automated Reasoning.
[28] Corrado Priami,et al. BetaWB - A language for modular representation of biological systems , 2007 .
[29] Corrado Priami,et al. A Stochastic Semantics for BioAmbients , 2007, PaCT.
[30] V. N. Reddy,et al. Qualitative analysis of biochemical reaction systems , 1996, Comput. Biol. Medicine.
[31] Vincent Danos,et al. Rule-Based Modelling of Cellular Signalling , 2007, CONCUR.
[32] Luca Cardelli,et al. Mobile Ambients , 1998, FoSSaCS.
[33] Robin Milner,et al. Communication and concurrency , 1989, PHI Series in computer science.
[34] José Meseguer,et al. Pathway Logic: Symbolic Analysis of Biological Signaling , 2001, Pacific Symposium on Biocomputing.
[35] Corrado Priami,et al. Stochastic pi-Calculus , 1995, Comput. J..
[36] H. Kitano. Systems Biology: A Brief Overview , 2002, Science.
[37] Jane Hillston,et al. Process Algebras in Systems Biology , 2008, SFM.
[38] Luca Cardelli,et al. BioAmbients: an abstraction for biological compartments , 2004, Theor. Comput. Sci..
[39] C. Hutchison,et al. Essential genes of a minimal bacterium. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[40] Corrado Priami,et al. The BlenX Language: A Tutorial , 2008, SFM.
[41] Leo W. Buss,et al. “The arrival of the fittest”: Toward a theory of biological organization , 1994 .
[42] Jane Hillston,et al. Bio-PEPA: An Extension of the Process Algebra PEPA for Biochemical Networks , 2007, FBTC@CONCUR.
[43] Robin Milner,et al. A Calculus of Communicating Systems , 1980, Lecture Notes in Computer Science.
[44] C. W. Gardiner,et al. Handbook of stochastic methods - for physics, chemistry and the natural sciences, Second Edition , 1986, Springer series in synergetics.
[45] C. A. R. Hoare,et al. Communicating Sequential Processes (Reprint) , 1983, Commun. ACM.
[46] A. Prasad Sistla,et al. Deciding Branching Time Logic: A Triple Exponential Decision Procedure for CTL* , 1983, Logic of Programs.
[47] Chiara Bodei,et al. A Control Flow Analysis for Beta-binders with and without static compartments , 2009, Theor. Comput. Sci..
[48] Eberhard O. Voit,et al. Computational Analysis of Biochemical Systems: A Practical Guide for Biochemists and Molecular Biologists , 2000 .
[49] Paolo Milazzo,et al. The Calculus of Looping Sequences , 2008, SFM.
[50] J. Tyson,et al. Computational Cell Biology , 2010 .
[51] David Harel,et al. LSCs: Breathing Life into Message Sequence Charts , 1999, Formal Methods Syst. Des..
[52] Pierpaolo Degano,et al. A Computational Approach to the Functional Screening of Genomes , 2007, PLoS Comput. Biol..
[53] Pierpaolo Degano,et al. VICE: A VIrtual CEll , 2004, CMSB.
[54] C. Priami. "Computational Methods in Systems Biology" for Theoretical Computer Science , 2004 .
[55] Luca Cardelli,et al. Efficient, Correct Simulation of Biological Processes in the Stochastic Pi-calculus , 2007, CMSB.
[56] Davide Sangiorgi. Bisimulation: from the origins to today , 2004, LICS 2004.
[57] Stephen Gilmore,et al. Towards Reliable Modelling with Stochastic Process Algebras , 2009 .
[58] Corrado Priami,et al. Beta Binders for Biological Interactions , 2004, CMSB.
[59] Joseph Sifakis,et al. A Unified Approach for Studying the Properties of Transition Systems , 1982, Theor. Comput. Sci..
[60] E. Doberkat. Stochastic Relations : Foundations for Markov Transition Systems , 2007 .
[61] Jane Hillston,et al. Process algebras for quantitative analysis , 2005, 20th Annual IEEE Symposium on Logic in Computer Science (LICS' 05).
[62] Christel Baier,et al. Model-Checking Algorithms for Continuous-Time Markov Chains , 2002, IEEE Trans. Software Eng..
[63] A. Fersht. Structure and mechanism in protein science , 1998 .
[64] E. Doberkat. Stochastic Relations , 2007 .
[65] E. Schrödinger,et al. What is life? : the physical aspect of the living cell , 1946 .
[66] Pierpaolo Degano,et al. Cells in Silico: A Holistic Approach , 2008, SFM.
[67] Darren J. Wilkinson. Stochastic Modelling for Systems Biology , 2006 .
[68] Flemming Nielson,et al. Static analysis for systems biology , 2004 .
[69] D. Gillespie. Exact Stochastic Simulation of Coupled Chemical Reactions , 1977 .
[70] Corrado Priami,et al. Application of a stochastic name-passing calculus to representation and simulation of molecular processes , 2001, Inf. Process. Lett..
[71] Lee A. Segel,et al. Modeling Dynamic Phenomena in Molecular and Cellular Biology , 1984 .
[72] Andrea Bracciali,et al. Stochastic models for the in silico simulation of synaptic processes , 2008, BMC Bioinformatics.
[73] Arto Salomaa,et al. Algorithmic Bioprocesses , 2009, Natural Computing Series.
[74] E. Koonin,et al. A minimal gene set for cellular life derived by comparison of complete bacterial genomes. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[75] D. Fell. Understanding the Control of Metabolism , 1996 .
[76] Daniel T. Gillespie,et al. Numerical Simulation for Biochemical Kinetics , 2008 .
[77] Robin Milner,et al. A Calculus of Mobile Processes, II , 1992, Inf. Comput..
[78] D. Harel,et al. Ieee/acm Transactions on Computational Biology and Bioinformatics 1 towards Verified Biological Models , 2022 .
[79] Jane Hillston,et al. A compositional approach to performance modelling , 1996 .
[80] Corrado Priami,et al. Beta-binders for Biological Quantitative Experiments , 2006, QAPL.