ResNet and MaxEnt modeling for quality assessment of Wolfiporia cocos based on FT-NIR fingerprints

As a fungus with both medicinal and edible value, Wolfiporia cocos (F. A. Wolf) Ryvarden & Gilb. has drawn more public attention. Chemical components’ content fluctuates in wild and cultivated W. cocos, whereas the accumulation ability of chemical components in different parts is different. In order to perform a quality assessment of W. cocos, we proposed a comprehensive method which was mainly realized by Fourier transform near-infrared (FT-NIR) spectroscopy and ultra-fast liquid chromatography (UFLC). A qualitative analysis means was built a residual convolutional neural network (ResNet) to recognize synchronous two-dimensional correlation spectroscopy (2DCOS) images. It can rapidly identify samples from wild and cultivated W. cocos in different parts. As a quantitative analysis method, UFLC was used to determine the contents of three triterpene acids in 547 samples. The results showed that a simultaneous qualitative and quantitative strategy could accurately evaluate the quality of W. cocos. The accuracy of ResNet models combined synchronous FT-NIR 2DCOS in identifying wild and cultivated W. cocos in different parts was as high as 100%. The contents of three triterpene acids in Poriae Cutis were higher than that in Poria, and the one with wild Poriae Cutis was the highest. In addition, the suitable habitat plays a crucial role in the quality of W. cocos. The maximum entropy (MaxEnt) model is a common method to predict the suitable habitat area for W. cocos under the current climate. Through the results, we found that suitable habitats were mostly situated in Yunnan Province of China, which accounted for approximately 49% of the total suitable habitat area of China. The research results not only pave the way for the rational planting in Yunnan Province of China and resource utilization of W. cocos, but also provide a basis for quality assessment of medicinal fungi.

[1]  Lian Li,et al.  A method of two-dimensional correlation spectroscopy combined with residual neural network for comparison and differentiation of medicinal plants raw materials superior to traditional machine learning: a case study on Eucommia ulmoides leaves , 2022, Plant methods.

[2]  V. Baeten,et al.  Deep computer vision system for cocoa classification , 2022, Multimedia Tools and Applications.

[3]  Zhi-tian Zuo,et al.  Identification of geographical origin and different parts of Wolfiporia cocos from Yunnan in China using PLS-DA and ResNet based on FT-NIR. , 2022, Phytochemical analysis : PCA.

[4]  Ji Zhang,et al.  Occurrence, distribution, and associations of essential and non-essential elements in the medicinal and edible fungus "Fuling" from southern China. , 2022, The Science of the total environment.

[5]  Hong Wang,et al.  Impacts of environment and human activity on grid-scale land cropping suitability and optimization of planting structure, measured based on the MaxEnt model. , 2022, The Science of the total environment.

[6]  J. Riedl,et al.  Fourier-transform near-infrared spectroscopy as a fast screening tool for the verification of the geographical origin of grain maize (Zea mays L.) , 2022, Food Control.

[7]  S. Karthikeyan,et al.  Pb intoxicated biomolecular changes in Cladonia convoluta studied using 2DCOS Infrared spectroscopy coupled with chemometric analysis , 2022, Vibrational Spectroscopy.

[8]  Hengye Chen,et al.  Accurate identification of the geographical origins of lily using near-infrared spectroscopy combined with carbon dot-tetramethoxyporphyrin nanocomposite and chemometrics. , 2022, Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy.

[9]  Zhengjing Ma,et al.  Deep learning for geological hazards analysis: Data, models, applications, and opportunities , 2021, Earth-Science Reviews.

[10]  Fu Chen,et al.  Increasing inconsistency between climate suitability and production of cotton (Gossypium hirsutum L.) in China , 2021 .

[11]  B. Debus,et al.  Deep learning in analytical chemistry , 2021, TrAC Trends in Analytical Chemistry.

[12]  Yuan-zhong Wang,et al.  Superiority Verification of Deep Learning in the Identification of Medicinal Plants: Taking Paris polyphylla var. yunnanensis as an Example , 2021, Frontiers in Plant Science.

[13]  Zefang Zhao,et al.  Moderate warming will expand the suitable habitat of Ophiocordyceps sinensis and expand the area of O. sinensis with high adenosine content , 2021 .

[14]  Y. Ozaki,et al.  Advances, challenges and perspectives of quantum chemical approaches in molecular spectroscopy of the condensed phase. , 2021, Chemical Society reviews.

[15]  Hongbin Pu,et al.  Efficient extraction of deep image features using convolutional neural network (CNN) for applications in detecting and analysing complex food matrices , 2021, Trends in Food Science & Technology.

[16]  Zhimin Liu,et al.  Discrimination of the fruits of Amomum tsao-ko according to geographical origin by 2DCOS image with RGB and Resnet image analysis techniques , 2021 .

[17]  C. Huck,et al.  Spectra-structure correlations in NIR region of polymers from quantum chemical calculations. The cases of aromatic ring, C=O, C≡N and C-Cl functionalities. , 2021, Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy.

[18]  Zhi-Tian Zuo,et al.  Geographical discrimination of Boletus Edulis using two dimensional correlation spectral or integrative two dimensional correlation spectral image with ResNet , 2021 .

[19]  Yuan-zhong Wang,et al.  Assessing the impacts of climate change and habitat suitability on the distribution and quality of medicinal plant using multiple information integration: Take Gentiana rigescens as an example , 2021, Ecological Indicators.

[20]  Yuan-zhong Wang,et al.  Geographical traceability and multielement analysis of edible and medicinal fungi: Taking Wolfiporia cocos (F.A. Wolf) Ryvarden and Gilb. as an example. , 2021, Journal of food science.

[21]  Huasheng Peng,et al.  [Suitable planting area of Poria cocos in Jinzhai county of Dabie Mountains region]. , 2021, Zhongguo Zhong yao za zhi = Zhongguo zhongyao zazhi = China journal of Chinese materia medica.

[22]  Julian Fierrez,et al.  Fusing CNNs and statistical indicators to improve image classification , 2020, Inf. Fusion.

[23]  Ji Zhang,et al.  Deep learning for species identification of bolete mushrooms with two-dimensional correlation spectral (2DCOS) images. , 2020, Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy.

[24]  Chunlin Li,et al.  Projected drought conditions in Northwest China with CMIP6 models under combined SSPs and RCPs for 2015–2099 , 2020, Advances in Climate Change Research.

[25]  F. Martin,et al.  The Wolfiporia cocos Genome and Transcriptome Shed Light on the Formation of Its Edible and Medicinal Sclerotium , 2020, Genom. Proteom. Bioinform..

[26]  Yuan-zhong Wang,et al.  Deep learning for geographical discrimination of Panax notoginseng with directly near-infrared spectra image , 2020 .

[27]  Yuan-zhong Wang,et al.  Comparison and quantitative analysis of wild and cultivated Macrohyporia cocos using attenuated total refection-Fourier transform infrared spectroscopy combined with ultra-fast liquid chromatography. , 2020, Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy.

[28]  Bruce A. Draper,et al.  Inception and ResNet features are (almost) equivalent , 2020, Cognitive Systems Research.

[29]  Zefang Zhao,et al.  Predicting the impacts of climate change, soils and vegetation types on the geographic distribution of Polyporus umbellatus in China. , 2019, The Science of the total environment.

[30]  Xiyan Mu,et al.  A UHPLC-QTOF-MS/MS method for the simultaneous determination of eight triterpene compounds from Poria cocos (Schw.) Wolf extract in rat plasma: Application to a comparative pharmacokinetic study. , 2018, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

[31]  C. Pasquini Near infrared spectroscopy: A mature analytical technique with new perspectives - A review. , 2018, Analytica chimica acta.

[32]  I. Noda Two-trace two-dimensional (2T2D) correlation spectroscopy – A method for extracting useful information from a pair of spectra , 2018 .

[33]  Jian Sun,et al.  Deep Residual Learning for Image Recognition , 2015, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[34]  Geoffrey E. Hinton,et al.  Deep Learning , 2015, Nature.

[35]  Hong-Xi Xu,et al.  Advanced ultra-performance liquid chromatography-photodiode array-quadrupole time-of-flight mass spectrometric methods for simultaneous screening and quantification of triterpenoids in Poria cocos. , 2014, Food chemistry.

[36]  Ji Zhang,et al.  Discrimination of Wild Paris Based on Near Infrared Spectroscopy and High Performance Liquid Chromatography Combined with Multivariate Analysis , 2014, PloS one.

[37]  Q. Mei,et al.  Diuretic activity of some fractions of the epidermis of Poria cocos. , 2013, Journal of ethnopharmacology.

[38]  S. Lanteri,et al.  Detection of minced beef adulteration with turkey meat by UV-vis, NIR and MIR spectroscopy , 2013 .

[39]  Wei Zhao,et al.  Impact of Geography and Climate on the Genetic Differentiation of the Subtropical Pine Pinus yunnanensis , 2013, PloS one.

[40]  Y. Lee,et al.  Effect of Poria cocos on hypertonic stress‐induced water channel expression and apoptosis in renal collecting duct cells , 2012, Journal of ethnopharmacology.

[41]  J. Ríos1 Chemical Constituents and Pharmacological Properties of Poria cocos , 2011, Planta medica.

[42]  A. Peterson,et al.  Environmental data sets matter in ecological niche modelling: an example with Solenopsis invicta and Solenopsis richteri. , 2007 .

[43]  H. Büning-Pfaue Analysis of water in food by near infrared spectroscopy , 2003 .

[44]  I. Noda Generalized Two-Dimensional Correlation Method Applicable to Infrared, Raman, and other Types of Spectroscopy , 1993 .

[45]  J A Swets,et al.  Measuring the accuracy of diagnostic systems. , 1988, Science.