A Screen for RNA-Binding Proteins in Yeast Indicates Dual Functions for Many Enzymes
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Sarath Chandra Janga | S. Janga | Nitish Mittal | A. Gerber | Nitish Mittal | André P. Gerber | Tanja Scherrer | T. Scherrer | Tanja Scherrer
[1] I. Small,et al. The PPR motif - a TPR-related motif prevalent in plant organellar proteins. , 2000, Trends in biochemical sciences.
[2] M. Moore. From Birth to Death: The Complex Lives of Eukaryotic mRNAs , 2005, Science.
[3] Mark Gerstein,et al. Regulation of Gene Expression by a Metabolic Enzyme , 2004, Science.
[4] Julia Salzman,et al. Proteome-Wide Search Reveals Unexpected RNA-Binding Proteins in Saccharomyces cerevisiae , 2010, PloS one.
[5] T. Maniatis,et al. An extensive network of coupling among gene expression machines , 2002, Nature.
[6] L. Holm,et al. The Pfam protein families database , 2005, Nucleic Acids Res..
[7] Gavin Sherlock,et al. The Stanford Microarray Database: implementation of new analysis tools and open source release of software , 2002, Nucleic Acids Res..
[8] Pierre Baldi,et al. A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes , 2001, Bioinform..
[9] Sarath Chandra Janga,et al. Dissecting the expression dynamics of RNA-binding proteins in posttranscriptional regulatory networks , 2009, Proceedings of the National Academy of Sciences.
[10] A. Gerber,et al. Affinity purification of ribosomes to access the translatome. , 2009, Methods.
[11] Yie-Hwa Chang,et al. Evidence that two zinc fingers in the methionine aminopeptidase from Saccharomyces cerevisiae are important for normal growth , 1995, Molecular and General Genetics MGG.
[12] R. Terns,et al. Non-coding RNAs: lessons from the small nuclear and small nucleolar RNAs , 2007, Nature Reviews Molecular Cell Biology.
[13] Joseph L DeRisi,et al. Unbiased selection of localization elements reveals cis-acting determinants of mRNA bud localization in Saccharomyces cerevisiae. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[14] E. O’Shea,et al. Global analysis of protein expression in yeast , 2003, Nature.
[15] J. C. Schmitz,et al. Translational autoregulation of thymidylate synthase and dihydrofolate reductase. , 2004, Frontiers in bioscience : a journal and virtual library.
[16] Lynne Regan,et al. TPR proteins: the versatile helix. , 2003, Trends in biochemical sciences.
[17] Yujiang Shi,et al. Metabolic enzymes and coenzymes in transcription--a direct link between metabolism and transcription? , 2004, Trends in genetics : TIG.
[18] A. Gerber,et al. Post-transcriptional gene regulation: From genome-wide studies to principles , 2007, Cellular and Molecular Life Sciences.
[19] Barbara M. Bakker,et al. The fluxes through glycolytic enzymes in Saccharomyces cerevisiae are predominantly regulated at posttranscriptional levels , 2007, Proceedings of the National Academy of Sciences.
[20] W Baumeister,et al. A repetitive sequence in subunits of the 26S proteasome and 20S cyclosome (anaphase-promoting complex). , 1997, Trends in biochemical sciences.
[21] M. Hentze,et al. Enzymes as RNA-binding proteins: a role for (di)nucleotide-binding domains? , 1994, Trends in biochemical sciences.
[22] S. Blackshaw,et al. Profiling the Human Protein-DNA Interactome Reveals ERK2 as a Transcriptional Repressor of Interferon Signaling , 2009, Cell.
[23] Mark Gerstein,et al. Biochemical and genetic analysis of the yeast proteome with a movable ORF collection. , 2005, Genes & development.
[24] Lindsey Leach,et al. Impacts of yeast metabolic network structure on enzyme evolution , 2007, Genome Biology.
[25] David Botstein,et al. GO: : TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes , 2004, Bioinform..
[26] J. Smith,et al. Molecular cloning, sequencing, deletion, and overexpression of a methionine aminopeptidase gene from Saccharomyces cerevisiae. , 1992, The Journal of biological chemistry.
[27] Robert D. Finn,et al. The Pfam protein families database , 2004, Nucleic Acids Res..
[28] F. Sherman. Getting started with yeast. , 1991, Methods in enzymology.
[29] Christiane Branlant,et al. Pseudouridylation at Position 32 of Mitochondrial and Cytoplasmic tRNAs Requires Two Distinct Enzymes in Saccharomyces cerevisiae* , 2004, Journal of Biological Chemistry.
[30] J. Keene. RNA regulons: coordination of post-transcriptional events , 2007, Nature Reviews Genetics.
[31] Jeremiah J. Faith,et al. Many Microbe Microarrays Database: uniformly normalized Affymetrix compendia with structured experimental metadata , 2007, Nucleic Acids Res..
[32] M. Hentze,et al. Balancing Acts Molecular Control of Mammalian Iron Metabolism , 2004, Cell.
[33] X Li,et al. Amino-terminal protein processing in Saccharomyces cerevisiae is an essential function that requires two distinct methionine aminopeptidases. , 1995, Proceedings of the National Academy of Sciences of the United States of America.
[34] M. Gerstein,et al. Global Analysis of Protein Activities Using Proteome Chips , 2001, Science.
[35] N. Mukherjee,et al. Systematic analysis of posttranscriptional gene expression , 2010, Wiley interdisciplinary reviews. Systems biology and medicine.
[36] Daniel Herschlag,et al. Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[37] Joseph A. Vetro,et al. Yeast methionine aminopeptidase type 1 is ribosome‐associated and requires its N‐terminal zinc finger domain for normal function in vivo * , 2002, Journal of cellular biochemistry.
[38] T. Speed,et al. Summaries of Affymetrix GeneChip probe level data. , 2003, Nucleic acids research.
[39] Daniel Herschlag,et al. Diverse RNA-Binding Proteins Interact with Functionally Related Sets of RNAs, Suggesting an Extensive Regulatory System , 2008, PLoS biology.
[40] K. Köhrer,et al. Preparation of high molecular weight RNA. , 1991, Methods in enzymology.
[41] J. Lieb,et al. ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments. , 2004, Genomics.
[42] M. Hentze,et al. The REM phase of gene regulation. , 2010, Trends in biochemical sciences.
[43] C. Kao,et al. RNA-binding proteins that inhibit RNA virus infection , 2007, Proceedings of the National Academy of Sciences.
[44] A. Gerber,et al. Circuitry of mRNA regulation , 2010, Wiley interdisciplinary reviews. Systems biology and medicine.
[45] J. Cieśla. Metabolic enzymes that bind RNA: yet another level of cellular regulatory network? , 2006, Acta biochimica Polonica.
[46] P. Brown,et al. Widespread cytoplasmic mRNA transport in yeast: Identification of 22 bud-localized transcripts using DNA microarray analysis , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[47] T. Glisovic,et al. RNA‐binding proteins and post‐transcriptional gene regulation , 2008, FEBS letters.
[48] Eugene V Koonin,et al. Comparative genomics and evolution of proteins involved in RNA metabolism. , 2002, Nucleic acids research.
[49] Raymond S Brown,et al. Zinc finger proteins: getting a grip on RNA. , 2005, Current opinion in structural biology.
[50] P. Brown,et al. Extensive Association of Functionally and Cytotopically Related mRNAs with Puf Family RNA-Binding Proteins in Yeast , 2004, PLoS biology.
[51] Gabriele Varani,et al. RNA is rarely at a loss for companions; as soon as RNA , 2008 .