MicroRNAs implicated in dysregulation of gene expression following human lung transplantation

[1]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .

[2]  Wei Zhang,et al.  Genome-Wide Variation of Cytosine Modifications Between European and African Populations and the Implications for Complex Traits , 2013, Genetics.

[3]  Wei Zhang,et al.  Integrating microRNAs into a system biology approach to acute lung injury. , 2011, Translational research : the journal of laboratory and clinical medicine.

[4]  Lincoln Stein,et al.  Reactome: a database of reactions, pathways and biological processes , 2010, Nucleic Acids Res..

[5]  M. Dolan,et al.  The emerging role of microRNAs in drug responses. , 2010, Current opinion in molecular therapeutics.

[6]  Yves A. Lussier,et al.  ExprTarget: An Integrative Approach to Predicting Human MicroRNA Targets , 2010, PloS one.

[7]  R. Kotloff Does lung transplantation confer a survival benefit? , 2009, Current opinion in organ transplantation.

[8]  Vivian G. Cheung,et al.  Genetics of human gene expression: mapping DNA variants that influence gene expression , 2009, Nature Reviews Genetics.

[9]  K. McCurry,et al.  Lung Transplantation in the United States, 1998–2007 , 2009, American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons.

[10]  N. Cox,et al.  SNPinProbe_1.0: A database for filtering out probes in the Affymetrix GeneChip® Human Exon 1.0 ST array potentially affected by SNPs , 2008, Bioinformation.

[11]  Scott A. Rifkin,et al.  Revealing the architecture of gene regulation: the promise of eQTL studies. , 2008, Trends in genetics : TIG.

[12]  Tyson A. Clark,et al.  Evaluation of Genetic Variation Contributing to Differences in Gene Expression between Populations (DOI:10.1016/j.ajhg.2007.12.015) , 2008 .

[13]  Tyson A. Clark,et al.  Evaluation of genetic variation contributing to differences in gene expression between populations. , 2008, American journal of human genetics.

[14]  M. Dolan,et al.  The HapMap Resource is Providing New Insights into Ourselves and its Application to Pharmacogenomics , 2008, Bioinformatics and biology insights.

[15]  Stijn van Dongen,et al.  miRBase: tools for microRNA genomics , 2007, Nucleic Acids Res..

[16]  Brad T. Sherman,et al.  Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources , 2008, Nature Protocols.

[17]  D. Koller,et al.  Population genomics of human gene expression , 2007, Nature Genetics.

[18]  Gordon K. Smyth,et al.  A comparison of background correction methods for two-colour microarrays , 2007, Bioinform..

[19]  John D. Storey,et al.  Gene-expression variation within and among human populations. , 2007, American journal of human genetics.

[20]  R. Redon,et al.  Relative Impact of Nucleotide and Copy Number Variation on Gene Expression Phenotypes , 2007, Science.

[21]  Joshua T. Burdick,et al.  Common genetic variants account for differences in gene expression among ethnic groups , 2007, Nature Genetics.

[22]  M. Hertz,et al.  Novel insights into lung transplant rejection by microarray analysis. , 2007, Proceedings of the American Thoracic Society.

[23]  Cheng Li,et al.  Adjusting batch effects in microarray expression data using empirical Bayes methods. , 2007, Biostatistics.

[24]  T. Tatusova,et al.  NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins , 2006, Nucleic Acids Research.

[25]  Andrew D. Yu,et al.  Sequential gene expression profiling in lung transplant recipients with chronic rejection. , 2006, Chest.

[26]  Hiroaki Kitano,et al.  The PANTHER database of protein families, subfamilies, functions and pathways , 2004, Nucleic Acids Res..

[27]  Junchao Cai,et al.  Lung transplantation in the United States: 1990-2005. , 2005, Clinical transplants.

[28]  Exon Array Background Correction , 2005 .

[29]  S. Horvath,et al.  Kidney Transplant Rejection and Tissue Injury by Gene Profiling of Biopsies and Peripheral Blood Lymphocytes , 2004, American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons.

[30]  C. Molony,et al.  Genetic analysis of genome-wide variation in human gene expression , 2004, Nature.

[31]  Susumu Goto,et al.  The KEGG resource for deciphering the genome , 2004, Nucleic Acids Res..

[32]  Brad T. Sherman,et al.  DAVID: Database for Annotation, Visualization, and Integrated Discovery , 2003, Genome Biology.

[33]  Rafael A Irizarry,et al.  Exploration, normalization, and summaries of high density oligonucleotide array probe level data. , 2003, Biostatistics.

[34]  R. Spielman,et al.  Natural variation in human gene expression assessed in lymphoblastoid cells , 2003, Nature Genetics.

[35]  R. Tibshirani,et al.  Diagnosis of multiple cancer types by shrunken centroids of gene expression , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[36]  R. Tibshirani,et al.  Significance analysis of microarrays applied to the ionizing radiation response , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[37]  Elizabeth M. Smigielski,et al.  dbSNP: the NCBI database of genetic variation , 2001, Nucleic Acids Res..

[38]  M. Ashburner,et al.  Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.

[39]  Y. Benjamini,et al.  Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .