Real-time detection of COVID-19 epicenters within the United States using a network of smart thermometers

Containing outbreaks of infectious disease requires rapid identification of transmission hotspots, as the COVID-19 pandemic demonstrates. Focusing limited public health resources on transmission hotspots can contain spread, thus reducing morbidity and mortality, but rapid data on community-level disease dynamics is often unavailable. Here, we demonstrate an approach to identify anomalously elevated levels of influenza-like illness (ILI) in real-time, at the scale of US counties. Leveraging data from a geospatial network of thermometers encompassing more than one million users across the US, we identify anomalies by generating accurate, county-specific forecasts of seasonal ILI from a point prior to a potential outbreak and comparing real-time data to these expectations. Anomalies are strongly correlated with COVID-19 case counts and may provide an early-warning system to locate outbreak epicenters.

[1]  C. Fraser,et al.  A New Framework and Software to Estimate Time-Varying Reproduction Numbers During Epidemics , 2013, American journal of epidemiology.

[2]  Mauricio Santillana,et al.  ARGO: a model for accurate estimation of influenza epidemics using Google search data , 2015, ArXiv.

[3]  Mauricio Santillana,et al.  Accurate estimation of influenza epidemics using Google search data via ARGO , 2015, Proceedings of the National Academy of Sciences.

[4]  Aaron C. Miller,et al.  Improving State-Level Influenza Surveillance by Incorporating Real-Time Smartphone-Connected Thermometer Readings Across Different Geographic Domains , 2019, Open Forum Infectious Diseases.

[5]  Oliver Morgan,et al.  Ebola Surveillance - Guinea, Liberia, and Sierra Leone. , 2016, MMWR supplements.

[6]  T. Daniel,et al.  The length–tension curve in muscle depends on lattice spacing , 2013, Proceedings of the Royal Society B: Biological Sciences.

[7]  Aaron C. Miller,et al.  A Smartphone-Driven Thermometer Application for Real-time Population- and Individual-Level Influenza Surveillance , 2018, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[8]  N. Ferguson,et al.  Time lines of infection and disease in human influenza: a review of volunteer challenge studies. , 2008, American journal of epidemiology.

[9]  R. Brook,et al.  Response to COVID-19 in Taiwan: Big Data Analytics, New Technology, and Proactive Testing. , 2020, JAMA.

[10]  Christl A. Donnelly,et al.  The role of rapid diagnostics in managing Ebola epidemics , 2015, Nature.

[11]  C. Viboud,et al.  Urbanization and humidity shape the intensity of influenza epidemics in U.S. cities , 2018, Science.

[12]  S. Ellner,et al.  Human mobility patterns predict divergent epidemic dynamics among cities , 2013, Proceedings of the Royal Society B: Biological Sciences.

[13]  Eric J Topol,et al.  Harnessing wearable device data to improve state-level real-time surveillance of influenza-like illness in the USA: a population-based study. , 2020, The Lancet. Digital health.