Multiscale Molecular Modelling of ATP‐Fueled Supramolecular Polymerisation and Depolymerisation**
暂无分享,去创建一个
[1] L. Pesce,et al. Self-assembled poly-catenanes from supramolecular toroidal building blocks , 2020, Nature.
[2] Subi J. George,et al. ATP-Driven Synthetic Supramolecular Assemblies: From ATP as a Template to Fuel. , 2020, Angewandte Chemie.
[3] Sarit S. Agasti,et al. Cooperative Supramolecular Block Copolymerization for the Synthesis of Functional Axial Organic Heterostructures. , 2020, Journal of the American Chemical Society.
[4] Subi J. George,et al. Self-Sorted, Random and Block Supramolecular Co-polymers via Sequence Controlled, Multicomponent Self-Assembly. , 2020, Journal of the American Chemical Society.
[5] Jakub Rydzewski,et al. Promoting transparency and reproducibility in enhanced molecular simulations , 2019, Nature Methods.
[6] G. Pavan,et al. How Defects Control the Out-of-Equilibrium Dissipative Evolution of a Supramolecular Tubule. , 2019, ACS nano.
[7] G. Pavan,et al. A Block Supramolecular Polymer and Its Kinetically Enhanced Stability. , 2018, Journal of the American Chemical Society.
[8] L. Albertazzi,et al. From isodesmic to highly cooperative: reverting the supramolecular polymerization mechanism in water by fine monomer design. , 2018, Chemical communications.
[9] Karteek K. Bejagam,et al. Biomimetic temporal self-assembly via fuel-driven controlled supramolecular polymerization , 2018, Nature Communications.
[10] K. Merz,et al. Extended Zinc AMBER Force Field (EZAFF). , 2018, Journal of chemical theory and computation.
[11] Ankit Jain,et al. Adenosine-Phosphate-Fueled, Temporally Programmed Supramolecular Polymers with Multiple Transient States. , 2017, Journal of the American Chemical Society.
[12] G. Pavan,et al. Effect of Concentration on the Supramolecular Polymerization Mechanism via Implicit-Solvent Coarse-Grained Simulations of Water-Soluble 1,3,5-Benzenetricarboxamide. , 2017, The journal of physical chemistry letters.
[13] M. Salvalaglio,et al. Into the Dynamics of a Supramolecular Polymer at Submolecular Resolution , 2017, Nature Communications.
[14] Alessandro Sorrenti,et al. Non-equilibrium steady states in supramolecular polymerization , 2017, Nature Communications.
[15] G. Pavan,et al. From Cooperative Self-Assembly to Water-Soluble Supramolecular Polymers Using Coarse-Grained Simulations. , 2017, ACS nano.
[16] E. W. Meijer,et al. Effect of H-Bonding on Order Amplification in the Growth of a Supramolecular Polymer in Water. , 2016, Journal of the American Chemical Society.
[17] Piotr Nowak,et al. Diversification of self-replicating molecules. , 2016, Nature chemistry.
[18] Job Boekhoven,et al. Transient assembly of active materials fueled by a chemical reaction , 2015, Science.
[19] Berk Hess,et al. GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers , 2015 .
[20] E. W. Meijer,et al. Programmierbare supramolekulare Polymerisationen , 2015 .
[21] Tom F A de Greef,et al. Programmable Supramolecular Polymerizations. , 2015, Angewandte Chemie.
[22] Masayuki Takeuchi,et al. Mechanism of self-assembly process and seeded supramolecular polymerization of perylene bisimide organogelator. , 2015, Journal of the American Chemical Society.
[23] E. W. Meijer,et al. Consequences of chirality on the dynamics of a water-soluble supramolecular polymer , 2015, Nature Communications.
[24] Tadashi Mori,et al. A rational strategy for the realization of chain-growth supramolecular polymerization , 2015, Science.
[25] David Beljonne,et al. A dynamic supramolecular polymer with stimuli-responsive handedness for in situ probing of enzymatic ATP hydrolysis , 2014, Nature Communications.
[26] Karteek K. Bejagam,et al. Supramolecular polymerization of benzene-1,3,5-tricarboxamide: a molecular dynamics simulation study. , 2014, The journal of physical chemistry. B.
[27] Masayuki Takeuchi,et al. Living supramolecular polymerization realized through a biomimetic approach , 2014, Nature Chemistry.
[28] Massimiliano Bonomi,et al. PLUMED 2: New feathers for an old bird , 2013, Comput. Phys. Commun..
[29] E. W. Meijer,et al. Functional Supramolecular Polymers , 2012, Science.
[30] Sandeep K. Reddy,et al. Cooperativity in the stacking of benzene-1,3,5-tricarboxamide: The role of dispersion , 2011 .
[31] George C Schatz,et al. Atomistic molecular dynamics simulations of peptide amphiphile self-assembly into cylindrical nanofibers. , 2011, Journal of the American Chemical Society.
[32] P. Hilbers,et al. Understanding cooperativity in hydrogen-bond-induced supramolecular polymerization: a density functional theory study. , 2010, The journal of physical chemistry. B.
[33] F. Chami,et al. Molecular order in a chromonic liquid crystal: a molecular simulation study of the anionic azo dye sunset yellow. , 2010, Journal of the American Chemical Society.
[34] Christopher A Waudby,et al. Mechanosensitive Self-Replication Driven by Self-Organization , 2010, Science.
[35] L. A. Lowery,et al. The trip of the tip: understanding the growth cone machinery , 2009, Nature Reviews Molecular Cell Biology.
[36] D. Tieleman,et al. The MARTINI force field: coarse grained model for biomolecular simulations. , 2007, The journal of physical chemistry. B.
[37] M. Parrinello,et al. Canonical sampling through velocity rescaling. , 2007, The Journal of chemical physics.
[38] P. Kollman,et al. Automatic atom type and bond type perception in molecular mechanical calculations. , 2006, Journal of molecular graphics & modelling.
[39] J. Lehn. Dynamers: dynamic molecular and supramolecular polymers , 2005 .
[40] Junmei Wang,et al. Development and testing of a general amber force field , 2004, J. Comput. Chem..
[41] Heather A. Carlson,et al. Development of polyphosphate parameters for use with the AMBER force field , 2003, J. Comput. Chem..
[42] K. Raymond,et al. Supramolecular assembly dynamics , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[43] D. ben-Avraham,et al. Trafficking and signaling through the cytoskeleton: a specific mechanism. , 2000, Journal of cell science.
[44] K Schulten,et al. VMD: visual molecular dynamics. , 1996, Journal of molecular graphics.
[45] D. van der Spoel,et al. GROMACS: A message-passing parallel molecular dynamics implementation , 1995 .
[46] M. Frisch,et al. Ab Initio Calculation of Vibrational Absorption and Circular Dichroism Spectra Using Density Functional Force Fields , 1994 .
[47] P. Kollman,et al. A well-behaved electrostatic potential-based method using charge restraints for deriving atomic char , 1993 .
[48] A. Becke. Density-functional thermochemistry. III. The role of exact exchange , 1993 .
[49] M. Kirschner,et al. Dynamic instability of microtubule growth , 1984, Nature.
[50] W. L. Jorgensen,et al. Comparison of simple potential functions for simulating liquid water , 1983 .
[51] M. Parrinello,et al. Polymorphic transitions in single crystals: A new molecular dynamics method , 1981 .
[52] Matteo Mauro,et al. Controlling and imaging biomimetic self-assembly. , 2016, Nature chemistry.
[53] F. Oosawa,et al. The cooperative nature of G-F transformation of actin. , 1962, Biochimica et biophysica acta.