Integration of Bioinformatics Tools for Proteomics Research
暂无分享,去创建一个
[1] P. Debata,et al. Prediction of 3-Dimensional Structure of Cathepsin L Protein of Rattus Norvegicus , 2008 .
[2] J Alberto Medina-Aunon,et al. The ProteoRed MIAPE web toolkit: A User-friendly Framework to Connect and Share Proteomics Standards* , 2011, Molecular & Cellular Proteomics.
[3] Rune Matthiesen,et al. Discussion on common data analysis strategies used in MS‐based proteomics , 2011, Proteomics.
[4] Gajendra P. S. Raghava,et al. AC2DGel: analysis and comparison of 2D gels , 2008 .
[5] Jonathan E. Moore,et al. The Use of Conjunctival Swab for the Proteomic Characterisation of Dry Eye Syndrome , 2008 .
[6] D. Barh,et al. Epitope Design from Transporter Targets in N. gonorrhoeae , 2009 .
[7] Brandon M. Malone,et al. The Proteogenomic Mapping Tool , 2011, BMC Bioinformatics.
[8] T. Kondo,et al. Proteome Expression Database of Ewing Sarcoma: a Segment of the Genome Medicine Database of Japan Proteomics , 2009 .
[9] Miguel C. Teixeira,et al. 2D electrophoresis-based expression proteomics: a microbiologist’s perspective , 2010, Expert review of proteomics.
[10] Mark D. Wilkinson,et al. DataBiNS-Viz: A Web-Based Tool for Visualization of Non-Synonymous SNP Data , 2008 .
[11] Umashankar Vetrivel,et al. Peptidomimetics Based Inhibitor Design for HIV 1 gp120 Attachment Protein , 2009 .
[12] Rolando Rodríguez,et al. Bioinformatic tools for proteomic data analysis: an overview , 2008 .
[13] D Marshall Porterfield,et al. Non-invasive tools for measuring metabolism and biophysical analyte transport: self-referencing physiological sensing. , 2011, Chemical Society reviews.
[14] Somnath Tagore,et al. Damages in Metabolic Pathways: Computational Approaches , 2009 .
[15] E. Petricoin,et al. Discovery of Infectious Disease Biomarkers in Murine Anthrax Model Using Mass Spectrometry of the Low-Molecular-Mass Serum Proteome , 2009 .
[16] Rajat K. De,et al. Pathway Modeling: New face of Graphical Probabilistic Analysis , 2008 .
[17] Paul W Brown,et al. Liquid chromatography/tandem mass spectrometry based targeted proteomics quantification of P-glycoprotein in various biological samples. , 2011, Rapid communications in mass spectrometry : RCM.
[18] Derek J. Bailey,et al. COMPASS: A suite of pre‐ and post‐search proteomics software tools for OMSSA , 2011, Proteomics.
[19] W. Tao,et al. Proteomic Studies of Syk-Interacting Proteins Using a Novel Amine-Specific Isotope Tag and GFP Nanotrap , 2011, Journal of the American Society for Mass Spectrometry.
[20] K. Tashiro,et al. Applying Magnetic Bead Separation / MALDI-TOF Mass Spectrometry to Human Tear Fluid Proteome Analysis , 2008 .
[21] Knut Reinert,et al. Bioinformatics for qualitative and quantitative proteomics. , 2011, Methods in molecular biology.
[22] Gerhard Körting,et al. Managing Proteomics Data: From Generation and Data Warehousing to Central Data Repository , 2008 .
[23] O. Maes,et al. Global Proteomics: Pharmacodynamic Decision Making via Geometric Interpretations of Proteomic Analyses , 2008 .
[24] Lincoln Stein,et al. Reactome pathway analysis to enrich biological discovery in proteomics data sets , 2011, Proteomics.
[25] David K Han,et al. PROTEOME-3D: An Interactive Bioinformatics Tool for Large-Scale Data Exploration and Knowledge Discovery* , 2003, Molecular & Cellular Proteomics.
[26] Andrew Kuznetsov. Genetic Networks Described in Stochastic Pi Machine (SPiM) Programming Language: Compositional Design , 2009 .
[27] A. Kuno,et al. Development of a data-mining system for differential profiling of cell glycoproteins based on lectin microarray , 2008 .
[28] Baldo Oliva,et al. Integration and Prediction of PPI Using Multiple Resources from Public Databases , 2008 .
[29] Proteome Expression Database of Lung Adenocarcinoma: a segment of the Genome Medicine Database of Japan Proteomics , 2009 .
[30] Winston Haynes,et al. SPIRE: Systematic protein investigative research environment. , 2011, Journal of proteomics.
[31] Valerie C Wasinger,et al. Protein and peptide fractionation, enrichment and depletion: Tools for the complex proteome , 2011, Proteomics.
[32] B. V. Breukelen,et al. Targeted SCX Based Peptide Fractionation for Optimal Sequencing by Collision Induced, and Electron Transfer Dissociation , 2008 .
[33] L. Lomas,et al. Protein Sample Treatment with Peptide Ligand Library: Coverage and Consistency , 2009 .
[34] H. Vrenken,et al. Identification of biomarkers for diagnosis and progression of MS by MALDI-TOF mass spectrometry , 2011, Multiple sclerosis.
[35] Hongfang Liu,et al. RedundancyMiner: De-replication of redundant GO categories in microarray and proteomics analysis , 2011, BMC Bioinformatics.
[36] Zhang-Zhi Hu,et al. Integrated Bioinformatics for Radiation-Induced Pathway Analysis from Proteomics and Microarray Data. , 2008, Journal of proteomics & bioinformatics.
[37] A. A. Rao,et al. Bioinformatic Analysis of Alzheimer's Disease Using Functional Protein Sequences , 2008 .
[38] Vaddi Srinivasa Rao,et al. Recent developments in life sciences research: Role of bioinformatics , 2008 .
[39] Sébastien Lemieux,et al. ProteoConnections: A bioinformatics platform to facilitate proteome and phosphoproteome analyses , 2011, Proteomics.
[40] S. Rogers,et al. Statistical methods and models for bridging Omics data levels. , 2011, Methods in molecular biology.
[41] Yun-ping Zhu,et al. Profiling of Phosphorylated Proteins in Human Fetal Liver , 2008 .
[42] P. Iadarola,et al. Advances in proteomic techniques for biomarker discovery in COPD , 2011, Expert review of clinical immunology.
[43] Mihaela E. Sardiu,et al. Building Protein-Protein Interaction Networks with Proteomics and Informatics Tools* , 2011, The Journal of Biological Chemistry.
[44] N. Sharma,et al. An Effective Method for the Analysis of Human Plasma Proteome using Two-dimensional Gel Electrophoresis , 2009 .
[45] Vijayakumar Saravanan,et al. siRNA Scanner - A Fuzzy Logic Based Tool for Small Interference RNA Design , 2008 .
[46] Elias S. Manolakos,et al. Visualizing Meta-Features in Proteomic Maps , 2011, BMC Bioinformatics.
[47] A. Fatima,et al. Proteomic Analysis Of The “Side Population” (SP) Cells From Murine Bone Marrow , 2009 .
[48] Henning Hermjakob,et al. Standardising Proteomics Data - the work of the HUPO Proteomics Standards Initiative , 2008 .
[49] Profiling of methyltransferases and other S-adenosyl-L-homocysteine-binding Proteins by Capture Compound Mass Spectrometry (CCMS). , 2010, Journal of visualized experiments : JoVE.
[50] Peter Hoffmann,et al. Imaging Mass Spectrometry and Its Methodological Application to Murine Tissue , 2008 .
[51] H. Stunnenberg,et al. Towards cracking the epigenetic code using a combination of high‐throughput epigenomics and quantitative mass spectrometry‐based proteomics , 2011, BioEssays : news and reviews in molecular, cellular and developmental biology.
[52] D. Penque,et al. Signaling pathways of proteostasis network unraveled by proteomic approaches on the understanding of misfolded protein rescue. , 2011, Methods in enzymology.
[53] Knut Reinert,et al. Antilope—A Lagrangian Relaxation Approach to the de novo Peptide Sequencing Problem , 2011, IEEE/ACM Transactions on Computational Biology and Bioinformatics.
[54] K. Ramamoorthy,et al. Comparative Modeling Of Viral Protein R (Vpr) From Human Immunodeficiency Virus 1 (Hiv 1) , 2008 .
[55] Jennifer L Greene,et al. Strategies and tools to explore protein S-nitrosylation. , 2012, Biochimica et biophysica acta.
[56] J. Coorssen,et al. Quantitative proteomics: assessing the spectrum of in-gel protein detection methods , 2011, Journal of chemical biology.
[57] O. Jensen,et al. Analysis of mass spectrometry data in proteomics. , 2008, Methods in molecular biology.
[58] Niels Kuster,et al. Proteomic Analysis of the Response of Human Endothelial Cell Line EA.hy926 to 1800 GSM Mobile Phone Radiation , 2009 .
[59] Asad U. Khan,et al. Proteolytic Enzymes Database , 2008 .
[60] Hon-chi Lee,et al. Proteomic Analysis of Vascular Endothelial Cells-Effects of Laminar Shear Stress and High Glucose. , 2009, Journal of proteomics & bioinformatics.
[61] S. Rajesh,et al. Comparative Modeling and Analysis of 3-D Structure of EMV2, a Late Embryogenesis Abundant Protein of Vigna Radiata (Wilczek) , 2008 .
[62] V. Mathura,et al. Proteomic Analysis of Human Neuronal Cells Treated with the Gulf War Agent Pyridostigmine Bromide , 2009 .
[63] Leepika Tuli,et al. LC-MS Based Detection of Differential Protein Expression. , 2009, Journal of proteomics & bioinformatics.
[64] Anil Kumar,et al. Primer Designing for Dreb1A, A Cold Induced Gene , 2008 .
[65] K. Blennow,et al. Proteome Analysis of Serum-Containing Conditioned Medium from Primary Astrocyte Cultures , 2008 .
[66] Martin Eisenacher,et al. Automated Calculation of Unique Peptide Sequences for Unambiguous Identification of Highly Homologous Proteins by Mass Spectrometry , 2008 .
[67] P. Somvanshi,et al. In Silico Prediction of Epitopes in Virulence Proteins of Mycobacterium Tuberculosis H37Rv for Diagnostic and Subunit Vaccine Design , 2008 .
[68] E. A. Ponomarenko,et al. Knowledge-based technologies in proteomics , 2011, Russian Journal of Bioorganic Chemistry.
[69] Vladimir Brusic,et al. Data processing and analysis for protein microarrays. , 2011, Methods in molecular biology.
[70] Shufang Liang,et al. The Optimized Conditions of Two Dimensional Polyacrylamide Gel Electrophoresis for Serum Proteomics , 2008 .
[71] Birgit Schilling,et al. ScanRanker: Quality assessment of tandem mass spectra via sequence tagging. , 2011, Journal of proteome research.