An encyclopedia of mouse DNA elements (Mouse ENCODE)

To complement the human Encyclopedia of DNA Elements (ENCODE) project and to enable a broad range of mouse genomics efforts, the Mouse ENCODE Consortium is applying the same experimental pipelines developed for human ENCODE to annotate the mouse genome.

Philip Cayting | Katrina Learned | Daniel Blankenberg | Bing Ren | Roderic Guigo | Michael Snyder | Yin Shen | Daniel J. Blankenberg | Diane Trout | Olgert Denas | Audra Johnson | Feng Yue | Yong Cheng | Ali Mortazavi | Sonali Jha | Mark Groudine | Lee E. Edsall | Henry Amrhein | Venkat S Malladi | Job Dekker | Chenghai Xue | Chris Zaleski | Deepti Jain | Tyrone Ryba | Tejaswini Mishra | Brian A Williams | Barbara J Wold | Ross Hardison | Gaurav Jain | David McCleary | Gregory E Crawford | Melissa S Cline | Manoj Hariharan | Georgi K Marinov | Jin Lian | Kate R Rosenbloom | W James Kent | R. Guigó | R. Sandstrom | J. Stamatoyannopoulos | Zhihai Ma | W. J. Kent | B. Williams | A. Mortazavi | B. Wold | P. Good | Philip Cayting | R. Kaul | K. Rosenbloom | S. Weissman | Olgert Denas | M. Groudine | T. Gingeras | R. Thurman | P. Sabo | J. Dekker | G. Crawford | Julien Lagarde | Jin Lian | E. Feingold | R. Hardison | B. Ren | M. Snyder | M. Cline | D. Blankenberg | Yin Shen | David F. McCleary | Z. Ye | Samantha Kuan | S. Djebali | A. Dobin | Wei Lin | Chenghai Xue | G. Marinov | C. Zaleski | Meagan Fastuca | Sonali Jha | Diane Trout | Huaien Wang | Audra K. Johnson | T. Canfield | S. Landt | Katherine I. Fisher-Aylor | M. Hariharan | Yong Cheng | James Taylor | Gilberto Desalvo | M. Pazin | D. Gilbert | A. Sanyal | C. Davis | Weisheng Wu | R. Lowdon | Leslie B. Adams | K. Learned | V. Malladi | V. Kirkup | Henry Amrhein | G. Jain | Gayathri Balasundaram | R. Byron | Michael Bender | C. Keller | G. Blobel | D. Jain | M. Weiss | T. Ryba | Vaughan Roach | Wulan Deng | Takayo Sasaki | Erica Giste | Mia Zhang | A. Stehling | Christopher C Morrissey | Swathi A. Kumar | Tejaswini Mishra | Marta Byrska-Bishop | Bryan R Lajoie1 | Kaun-Bei Chen | M. Pimkin | Katherine I. Fisher-Aylor | Anthony Kiralusha | Feng Yue | M. Byrska-Bishop | Mitchell J Weiss | David M Gilbert | Rajinder Kaul | Richard Sandstrom | Gerd A Blobel | Robert E Thurman | John A Stamatoyannopoulos | Rachel Byron | Theresa Canfield | Sarah Djebali | Samantha Kuan | Julien Lagarde | Takayo Sasaki | Weisheng Wu | Cheryl A Keller | Lee Edsall | Zhen Ye | Huaien Wang | Sherman M Weissman | Zhihai Ma | Rebecca F Lowdon | Wulan Deng | Carrie A Davis | Wei Lin | Thomas Gingeras | James Taylor | Peter J Sabo | Amartya Sanyal | Alex Dobin | Michael Bender | Erica Giste | Mia Zhang | Gayathri Balasundaram | Vaughan Roach | A Sandra Stehling | Stephen G Landt | Christopher Morrissey | Swathi A Kumar | Marta Byrska-Bishop | Kaun-Bei Chen | Max Pimkin | Katherine I Fisher-Aylor | Gilberto Desalvo | Anthony Kiralusha | Meagan Fastuca | Vanessa M Kirkup | Elise A Feingold | Peter J Good | Michael Pazin | Leslie B Adams | Rachel Byron | Amartya Sanyal | W. Kent | Gaurav Jain | M. Bender | M. Weiss | Carrie A. Davis

[1]  Nathaniel D. Heintzman,et al.  Histone modifications at human enhancers reflect global cell-type-specific gene expression , 2009, Nature.

[2]  Mouse Genome Sequencing Consortium Initial sequencing and comparative analysis of the mouse genome , 2002, Nature.

[3]  Colin N. Dewey,et al.  Initial sequencing and comparative analysis of the mouse genome. , 2002 .

[4]  J. Alcolado,et al.  Animal models of diabetes mellitus , 2005, Diabetic medicine : a journal of the British Diabetic Association.

[5]  L. Pennacchio,et al.  Comparative genomics: a tool to functionally annotate human DNA. , 2007, Methods in molecular biology.

[6]  William Stafford Noble,et al.  Global mapping of protein-DNA interactions in vivo by digital genomic footprinting , 2009, Nature Methods.

[7]  John M. Walker,et al.  Comparative Genomics , 2007, Methods In Molecular Biology™.

[8]  Axel Visel,et al.  Deletion of Ultraconserved Elements Yields Viable Mice , 2007, PLoS biology.

[9]  Job Dekker,et al.  Determining spatial chromatin organization of large genomic regions using 5C technology. , 2009, Methods in molecular biology.

[10]  Allen D. Delaney,et al.  Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing , 2007, Nature Methods.

[11]  Paul T. Groth,et al.  The ENCODE (ENCyclopedia Of DNA Elements) Project , 2004, Science.

[12]  H. Jacob,et al.  Comparative genomics for detecting human disease genes. , 2008, Advances in genetics.

[13]  B. Williams,et al.  Mapping and quantifying mammalian transcriptomes by RNA-Seq , 2008, Nature Methods.

[14]  Raymond K. Auerbach,et al.  A User's Guide to the Encyclopedia of DNA Elements (ENCODE) , 2011, PLoS biology.

[15]  A. Visel,et al.  Limits of sequence and functional conservation , 2010, Nature Genetics.

[16]  D. Largaespada,et al.  Mouse models of human disease. Part II: recent progress and future directions. , 1997, Genes & development.

[17]  Albert J. Vilella,et al.  A high-resolution map of human evolutionary constraint using 29 mammals , 2011, Nature.

[18]  David Haussler,et al.  ENCODE whole-genome data in the UCSC genome browser (2011 update) , 2010, Nucleic Acids Res..

[19]  A. Nagy,et al.  Mouse models of human disease , 2000, Clinical genetics.

[20]  J. Stamatoyannopoulos,et al.  Chromatin accessibility pre-determines glucocorticoid receptor binding patterns , 2011, Nature Genetics.

[21]  J. Nadeau,et al.  Phenotype-driven genetic approaches in mice: high-throughput phenotyping for discovering new models of cardiovascular disease. , 2001, Trends in cardiovascular medicine.

[22]  Tyrone Ryba,et al.  Genome-scale analysis of replication timing: from bench to bioinformatics , 2011, Nature Protocols.

[23]  Axel Visel,et al.  Functional autonomy of distant-acting human enhancers. , 2009, Genomics.