Use of Overlapping Group LASSO Sparse Deep Belief Network to Discriminate Parkinson's Disease and Normal Control

As a medical imaging technology which can show the metabolism of the brain, 18F-fluorodeoxyglucose (FDG)-positron emission tomography (PET) is of great value for the diagnosis of Parkinson's Disease (PD). With the development of pattern recognition technology, analysis of brain images using deep learning are becoming more and more popular. However, existing computer-aided-diagnosis technologies often over fit and have poor generalizability. Therefore, we aimed to improve a framework based on Group Lasso Sparse Deep Belief Network (GLS-DBN) for discriminating PD and normal control (NC) subjects based on FDG-PET imaging. In this study, 225 NC and 125 PD cohorts from Huashan and Wuxi 904 hospitals were selected. They were divided into the training & validation dataset and 2 test datasets. First, in the training & validation set, subjects were randomly partitioned 80:20, with multiple training iterations for the deep learning model. Next, Locally Linear Embedding was used as a dimension reduction algorithm. Then, GLS-DBN was used for feature learning and classification. Different sparse DBN models were used to compare datasets to evaluate the effectiveness of our framework. Accuracy, sensitivity, and specificity were examined to validate the results. Output variables of the network were also correlated with longitudinal changes of rating scales about movement disorders (UPDRS, H&Y). As a result, accuracy of prediction (90% in Test 1, 86% in Test 2) for classification of PD and NC patients outperformed conventional approaches. Output scores of the network were strongly correlated with UPDRS and H&Y (R = 0.705, p < 0.001; R = 0.697, p < 0.001 in Test 1; R = 0.592, p = 0.0018, R = 0.528, p = 0.0067 in Test 2). These results show the GLS-DBN is feasible method for early diagnosis of PD.

[1]  Stephen C. Strother,et al.  FDG PET Parkinson’s disease-related pattern as a biomarker for clinical trials in early stage disease , 2018, NeuroImage: Clinical.

[2]  Tomohiro Hayashida,et al.  Deep belief network optimization in speech recognition , 2017, 2017 International Conference on Sustainable Information Engineering and Technology (SIET).

[3]  Jacek M. Zurada,et al.  Convergence analyses on sparse feedforward neural networks via group lasso regularization , 2017, Inf. Sci..

[4]  Christophe Phillips,et al.  Multiclass classification of FDG PET scans for the distinction between Parkinson's disease and atypical parkinsonian syndromes , 2013, NeuroImage: Clinical.

[5]  Marc'Aurelio Ranzato,et al.  Sparse Feature Learning for Deep Belief Networks , 2007, NIPS.

[6]  Patrik O. Hoyer,et al.  Non-negative Matrix Factorization with Sparseness Constraints , 2004, J. Mach. Learn. Res..

[7]  Madhuri Behari,et al.  Regions-of-interest based automated diagnosis of Parkinson's disease using T1-weighted MRI , 2015, Expert Syst. Appl..

[8]  Isabella Castiglioni,et al.  The utility of FDG-PET in the differential diagnosis of Parkinsonism , 2017, Neurological research.

[9]  Hervé Glotin,et al.  Sparse Penalty in Deep Belief Networks: Using the Mixed Norm Constraint , 2013, ArXiv.

[10]  Glenn Fung,et al.  SVM feature selection for classification of SPECT images of Alzheimer's disease using spatial information , 2005, Fifth IEEE International Conference on Data Mining (ICDM'05).

[11]  Gang Wang,et al.  Deep Learning-Based Classification of Hyperspectral Data , 2014, IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing.

[12]  Xin Geng,et al.  Supervised nonlinear dimensionality reduction for visualization and classification , 2005, IEEE Transactions on Systems, Man, and Cybernetics, Part B (Cybernetics).

[13]  Inseok Hwang,et al.  A large-scale flight multi-objective assignment approach based on multi-island parallel evolution algorithm with cooperative coevolutionary , 2015, Science China Information Sciences.

[14]  Franz Pernkopf,et al.  Sparse nonnegative matrix factorization with ℓ0-constraints , 2012, Neurocomputing.

[15]  Anna Barnes,et al.  FDG PET in the differential diagnosis of parkinsonian disorders , 2005, NeuroImage.

[16]  Jian Wang,et al.  Use of radiomic features and support vector machine to distinguish Parkinson's disease cases from normal controls. , 2019, Annals of translational medicine.

[17]  S T Roweis,et al.  Nonlinear dimensionality reduction by locally linear embedding. , 2000, Science.

[18]  Yuichi Yoshida,et al.  Spectral Norm Regularization for Improving the Generalizability of Deep Learning , 2017, ArXiv.

[19]  Angelo Antonini,et al.  Imaging for early differential diagnosis of parkinsonism , 2010, The Lancet Neurology.

[20]  Yan Liu,et al.  Discriminative deep belief networks for visual data classification , 2011, Pattern Recognit..

[21]  Dazhe Zhao,et al.  Group Guided Sparse Group Lasso Multi-task Learning for Cognitive Performance Prediction of Alzheimer's Disease , 2017, BI.

[22]  Chun-Xia Zhang,et al.  A sparse-response deep belief network based on rate distortion theory , 2014, Pattern Recognit..

[23]  Ruimin Shen,et al.  Sparse Group Restricted Boltzmann Machines , 2010, AAAI.

[24]  Kyong Hwan Jin,et al.  Predicting cognitive decline with deep learning of brain metabolism and amyloid imaging , 2017, Behavioural Brain Research.

[25]  Seong-Whan Lee,et al.  Latent feature representation with stacked auto-encoder for AD/MCI diagnosis , 2013, Brain Structure and Function.

[26]  Olga Kayo,et al.  Locally linear embedding algorithm: extensions and applications , 2006 .

[27]  Norbert Schuff,et al.  Locally linear embedding (LLE) for MRI based Alzheimer's disease classification , 2013, NeuroImage.

[28]  Chris C. Tang,et al.  Differential diagnosis of parkinsonism: a metabolic imaging study using pattern analysis , 2010, The Lancet Neurology.

[29]  Magda Dąbrowska,et al.  The role of neuroimaging in the diagnosis of the atypical parkinsonian syndromes in clinical practice. , 2015, Neurologia i neurochirurgia polska.

[30]  B. Choe,et al.  Different metabolic patterns analysis of Parkinsonism on the 18F-FDG PET. , 2004, European journal of radiology.

[31]  Gerta Rücker,et al.  18F-FDG PET in Parkinsonism: Differential Diagnosis and Evaluation of Cognitive Impairment , 2017, The Journal of Nuclear Medicine.

[32]  Jun Huang,et al.  Infrared ultraspectral signature classification based on a restricted Boltzmann machine with sparse and prior constraints , 2015 .

[33]  Bao-Liang Lu,et al.  Investigating Critical Frequency Bands and Channels for EEG-Based Emotion Recognition with Deep Neural Networks , 2015, IEEE Transactions on Autonomous Mental Development.

[34]  David Eidelberg,et al.  Automated Differential Diagnosis of Early Parkinsonism Using Metabolic Brain Networks: A Validation Study , 2016, The Journal of Nuclear Medicine.

[35]  Yang Liu,et al.  A Multi-Task Learning Framework for Emotion Recognition Using 2D Continuous Space , 2017, IEEE Transactions on Affective Computing.

[36]  Yi Zhang,et al.  Speech bottleneck feature extraction method based on overlapping group lasso sparse deep neural network , 2018, Speech Commun..

[37]  Honglak Lee,et al.  Sparse deep belief net model for visual area V2 , 2007, NIPS.

[38]  Christian Igel,et al.  An Introduction to Restricted Boltzmann Machines , 2012, CIARP.

[39]  Marios Politis,et al.  Imaging in Parkinson's Disease. , 2017, International review of neurobiology.

[40]  Daniela Berg,et al.  The New Diagnostic Criteria for Parkinson's Disease. , 2017, International review of neurobiology.

[41]  Yee Whye Teh,et al.  A Fast Learning Algorithm for Deep Belief Nets , 2006, Neural Computation.

[42]  Sidong Liu,et al.  Multimodal Neuroimaging Feature Learning for Multiclass Diagnosis of Alzheimer's Disease , 2015, IEEE Transactions on Biomedical Engineering.

[43]  Mohammad Mehdi Homayounpour,et al.  Effective sparsity control in deep belief networks using normal regularization term , 2017, Knowledge and Information Systems.

[44]  Youngjin Yoo,et al.  Modeling the Variability in Brain Morphology and Lesion Distribution in Multiple Sclerosis by Deep Learning , 2014, MICCAI.

[45]  Zhi-Hua Zhou,et al.  Supervised nonlinear dimensionality reduction for visualization and classification , 2005, IEEE Transactions on Systems, Man, and Cybernetics, Part B (Cybernetics).

[46]  B. Chandra,et al.  Fast learning in Deep Neural Networks , 2016, Neurocomputing.

[47]  B. D. de Jong,et al.  Metabolic Imaging in Parkinson Disease , 2017, The Journal of Nuclear Medicine.

[48]  Bruno Dubois,et al.  New diagnostic criteria for , 2012 .

[49]  Robert D. Nowak,et al.  Classification With the Sparse Group Lasso , 2016, IEEE Transactions on Signal Processing.