The key role of solvent in condensation: Mapping water in liquid-liquid phase-separated FUS

Formation of biomolecular condensates through liquid-liquid phase separation (LLPS) has emerged as a pervasive principle in cell biology, allowing compartmentalization and spatiotemporal regulation of dynamic cellular processes. Proteins that formcondensatesunderphysiologicalconditionsoftencontainintrinsicallydisorderedregionswithlow-complexitydomains.Among them, the RNA-binding proteins FUS and TDP-43 have been a focus of intense investigation because aberrant condensation and aggregation of these proteins is linked to neurodegenerative diseases such as amyotrophic lateral sclerosis and frontotemporal de-mentia. LLPS occurs when protein-rich condensates form surrounded by a dilute aqueous solution. LLPS is per se entropically unfavorable. Energetically favorable multivalent protein-protein interactions are one important aspect to offset entropic costs. Another proposedaspect isthe release ofentropically unfavorable preorderedhydrationwaterinto the bulk. Weusedattenuatedtotal reflection spectroscopy in theterahertz frequency range to characterize thechangesin the hydrogen bondingnetwork accompanying the FUS enrichment in liquid-liquid phase-separated droplets to provide experimental evidence for the key role of the solvent as a thermodynamic driving force. The FUS concentration inside LLPS droplets was determined to be increased to 2.0 mM independent of the initial protein concentration (5 or 10 m M solutions) by fluorescence measurements. With terahertz spectroscopy, we revealed a dewetting of hydrophobic side chains in phase-separated FUS. Thus, the release of entropically unfavorable water populations into thebulkgoeshandinhandwithenthalpicallyfavorableprotein-proteininteraction.Bothchangesareenergeticallyfavorable,andour study shows that both contribute to the thermodynamic driving force in phase separation. is triggered or prevented on a molecular scale. Two thermodynamic driving forces have been proposed: protein-protein and protein-water interactions (mostly enthalpic), as well as the release of preorganized hydration water into the bulk (mostly entropic). Whereas most studies focus on the first aspect, experimental evidence for the (cid:5)

[1]  G. Fredrickson,et al.  Dehydration entropy drives liquid-liquid phase separation by molecular crowding , 2020, Communications Chemistry.

[2]  M. Heyden,et al.  Wrapping Up Hydrophobic Hydration: Locality Matters , 2020, The journal of physical chemistry letters.

[3]  M. Havenith,et al.  Solvent dynamics play a decisive role in the complex formation of biologically relevant redox proteins. , 2020, Physical chemistry chemical physics : PCCP.

[4]  Jacob I. Monroe,et al.  Water Structure and Properties at Hydrophilic and Hydrophobic Surfaces. , 2020, Annual review of chemical and biomolecular engineering.

[5]  R. Pappu,et al.  Physical Principles Underlying the Complex Biology of Intracellular Phase Transitions. , 2020, Annual review of biophysics.

[6]  Nicolas L. Fawzi,et al.  The (un)structural biology of biomolecular liquid-liquid phase separation using NMR spectroscopy , 2020, The Journal of Biological Chemistry.

[7]  Yongwon Jung,et al.  Interplay between intrinsically disordered proteins inside membraneless protein liquid droplets† , 2019, Chemical science.

[8]  S. Alberti,et al.  Liquid-Liquid Phase Separation in Disease. , 2019, Annual review of genetics.

[9]  S. Ebbinghaus,et al.  The synergic effect of water and biomolecules in intracellular phase separation , 2019, Nature Reviews Chemistry.

[10]  Yimei Lu,et al.  A unified mechanism for LLPS of ALS/FTLD-causing FUS as well as its modulation by ATP and oligonucleic acids , 2019, PLoS biology.

[11]  Nicolas L. Fawzi,et al.  Molecular interactions underlying liquid-liquid phase separation of the FUS low complexity domain , 2019, Nature Structural & Molecular Biology.

[12]  Nicolas L. Fawzi,et al.  TDP-43 α-helical structure tunes liquid–liquid phase separation and function , 2019, Proceedings of the National Academy of Sciences.

[13]  Rohit V. Pappu,et al.  LASSI: A lattice model for simulating phase transitions of multivalent proteins , 2019, bioRxiv.

[14]  H. Chan,et al.  Pressure-Sensitive and Osmolyte-Modulated Liquid-Liquid Phase Separation of Eye-Lens γ-Crystallins. , 2019, Journal of the American Chemical Society.

[15]  Eric N. Anderson,et al.  FUS pathology in ALS is linked to alterations in multiple ALS-associated proteins and rescued by drugs stimulating autophagy , 2019, Acta Neuropathologica.

[16]  G. Schwaab,et al.  Ion Hydration and Ion Pairing as Probed by THz Spectroscopy. , 2019, Angewandte Chemie.

[17]  M. Bonn,et al.  Molecular hydrophobicity at a macroscopically hydrophilic surface , 2019, Proceedings of the National Academy of Sciences.

[18]  J. Chen,et al.  ALS mutations of FUS suppress protein translation and disrupt the regulation of nonsense-mediated decay , 2018, Proceedings of the National Academy of Sciences.

[19]  Jeffrey B. Woodruff Assembly of Mitotic Structures through Phase Separation. , 2018, Journal of molecular biology.

[20]  Mingjie Zhang,et al.  Reconstituted Postsynaptic Density as a Molecular Platform for Understanding Synapse Formation and Plasticity , 2018, Cell.

[21]  Jacob I. Monroe,et al.  Computational discovery of chemically patterned surfaces that effect unique hydration water dynamics , 2018, Proceedings of the National Academy of Sciences.

[22]  R. Pappu,et al.  A Molecular Grammar Governing the Driving Forces for Phase Separation of Prion-like RNA Binding Proteins , 2018, Cell.

[23]  V. Uversky,et al.  The solvent side of proteinaceous membrane-less organelles in light of aqueous two-phase systems. , 2018, International journal of biological macromolecules.

[24]  S. Mukhopadhyay,et al.  Femtosecond Hydration Map of Intrinsically Disordered α-Synuclein. , 2018, Biophysical journal.

[25]  H. Chan,et al.  Pressure-Induced Dissolution and Reentrant Formation of Condensed, Liquid-Liquid Phase-Separated Elastomeric α-Elastin. , 2018, Chemistry.

[26]  P. Tomançak,et al.  RNA buffers the phase separation behavior of prion-like RNA binding proteins , 2018, Science.

[27]  Julie C. Sung,et al.  Nuclear-Import Receptors Reverse Aberrant Phase Transitions of RNA-Binding Proteins with Prion-like Domains , 2018, Cell.

[28]  M. Simons,et al.  Phase Separation of FUS Is Suppressed by Its Nuclear Import Receptor and Arginine Methylation , 2018, Cell.

[29]  C. Holt,et al.  FUS Phase Separation Is Modulated by a Molecular Chaperone and Methylation of Arginine Cation-π Interactions , 2018, Cell.

[30]  J. Taylor,et al.  Ubiquitin Modulates Liquid-Liquid Phase Separation of UBQLN2 via Disruption of Multivalent Interactions. , 2018, Molecules and Cells.

[31]  John K. Kim,et al.  FUS Regulates Activity of MicroRNA-Mediated Gene Silencing. , 2018, Molecular cell.

[32]  Daniel J. Muller,et al.  Tau protein liquid–liquid phase separation can initiate tau aggregation , 2018, The EMBO journal.

[33]  Nicolas L. Fawzi,et al.  A single N‐terminal phosphomimic disrupts TDP‐43 polymerization, phase separation, and RNA splicing , 2018, The EMBO journal.

[34]  R. Pappu,et al.  Phase separation of a yeast prion protein promotes cellular fitness , 2018, Science.

[35]  V. Uversky,et al.  In Aqua Veritas: The Indispensable yet Mostly Ignored Role of Water in Phase Separation and Membrane-less Organelles. , 2018, Biochemistry.

[36]  Ondrej Marsalek,et al.  The Interplay of Structure and Dynamics in the Raman Spectrum of Liquid Water over the Full Frequency and Temperature Range. , 2017, The journal of physical chemistry letters.

[37]  Adam P Willard,et al.  Characterizing Hydration Properties Based on the Orientational Structure of Interfacial Water Molecules. , 2018, Journal of chemical theory and computation.

[38]  A. Terry,et al.  Monomeric green fluorescent protein as a protein standard for small angle scattering , 2017 .

[39]  Nicholas Rego,et al.  Hydrophobicity of proteins and nanostructured solutes is governed by topographical and chemical context , 2017, Proceedings of the National Academy of Sciences.

[40]  R. Tycko,et al.  Structure of FUS Protein Fibrils and Its Relevance to Self-Assembly and Phase Separation of Low-Complexity Domains , 2017, Cell.

[41]  M. Bonn,et al.  Picosecond orientational dynamics of water in living cells , 2017, Nature Communications.

[42]  W. Robberecht,et al.  HDAC6 inhibition reverses axonal transport defects in motor neurons derived from FUS-ALS patients , 2017, Nature Communications.

[43]  C. Brangwynne,et al.  Liquid phase condensation in cell physiology and disease , 2017, Science.

[44]  H. Chan,et al.  Structural and hydrodynamic properties of an intrinsically disordered region of a germ cell-specific protein on phase separation , 2017, Proceedings of the National Academy of Sciences.

[45]  F. Böhm,et al.  Mapping Hydration Water around Alcohol Chains by THz Calorimetry , 2017, Angewandte Chemie.

[46]  Ming-Tzo Wei,et al.  Phase behaviour of disordered proteins underlying low density and high permeability of liquid organelles. , 2017, Nature chemistry.

[47]  Mustafa Mir,et al.  Phase separation drives heterochromatin domain formation , 2017, Nature.

[48]  Alma L. Burlingame,et al.  Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin , 2017, Nature.

[49]  Lisa D. Muiznieks,et al.  Direct observation of structure and dynamics during phase separation of an elastomeric protein , 2017, Proceedings of the National Academy of Sciences.

[50]  Anthony A. Hyman,et al.  Biomolecular condensates: organizers of cellular biochemistry , 2017, Nature Reviews Molecular Cell Biology.

[51]  A. Hyman,et al.  An aberrant phase transition of stress granules triggered by misfolded protein and prevented by chaperone function , 2017, The EMBO journal.

[52]  Joshua A. Riback,et al.  Stress-Triggered Phase Separation Is an Adaptive, Evolutionarily Tuned Response , 2017, Cell.

[53]  E. Blanch,et al.  Time-Domain THz Spectroscopy Reveals Coupled Protein-Hydration Dielectric Response in Solutions of Native and Fibrils of Human Lysozyme. , 2017, The journal of physical chemistry. B.

[54]  Nicolas L. Fawzi,et al.  ALS Mutations Disrupt Phase Separation Mediated by α-Helical Structure in the TDP-43 Low-Complexity C-Terminal Domain. , 2016, Structure.

[55]  Lars V. Schäfer,et al.  Hydration Dynamics of a Peripheral Membrane Protein. , 2016, Journal of the American Chemical Society.

[56]  D. Abbott,et al.  Tracking Aggregation and Fibrillation of Globular Proteins Using Terahertz and Far-Infrared Spectroscopies , 2016, IEEE Transactions on Terahertz Science and Technology.

[57]  Nicolas L. Fawzi,et al.  Residue-by-Residue View of In Vitro FUS Granules that Bind the C-Terminal Domain of RNA Polymerase II. , 2015, Molecular cell.

[58]  A. Kanagaraj,et al.  Phase Separation by Low Complexity Domains Promotes Stress Granule Assembly and Drives Pathological Fibrillization , 2015, Cell.

[59]  Marco Y. Hein,et al.  A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation , 2015, Cell.

[60]  Timothy D. Craggs,et al.  Phase Transition of a Disordered Nuage Protein Generates Environmentally Responsive Membraneless Organelles , 2015, Molecular cell.

[61]  Sudeep Banjade,et al.  Phase transitions of multivalent proteins can promote clustering of membrane receptors , 2014, eLife.

[62]  Martina Havenith,et al.  New insights into the role of water in biological function: studying solvated biomolecules using terahertz absorption spectroscopy in conjunction with molecular dynamics simulations. , 2014, Journal of the American Chemical Society.

[63]  Majid Hafezparast,et al.  PARP-1 dependent recruitment of the amyotrophic lateral sclerosis-associated protein FUS/TLS to sites of oxidative DNA damage , 2013, Nucleic acids research.

[64]  T. Haystead,et al.  The RNA-binding protein Fus directs translation of localized mRNAs in APC-RNP granules , 2013, The Journal of cell biology.

[65]  Li-Huei Tsai,et al.  Interaction of FUS and HDAC1 regulates DNA damage response and repair in neurons , 2013, Nature Neuroscience.

[66]  I. Bozzoni,et al.  FUS stimulates microRNA biogenesis by facilitating co‐transcriptional Drosha recruitment , 2012, The EMBO journal.

[67]  Johannes E. Schindelin,et al.  Fiji: an open-source platform for biological-image analysis , 2012, Nature Methods.

[68]  Jimin Pei,et al.  Cell-free Formation of RNA Granules: Low Complexity Sequence Domains Form Dynamic Fibers within Hydrogels , 2012, Cell.

[69]  Yves Marechal,et al.  The molecular structure of liquid water delivered by absorption spectroscopy in the whole IR region completed with thermodynamics data , 2011 .

[70]  S. Garde,et al.  Hydrophobicity of proteins and interfaces: insights from density fluctuations. , 2011, Annual review of chemical and biomolecular engineering.

[71]  J. Straub,et al.  Dry amyloid fibril assembly in a yeast prion peptide is mediated by long-lived structures containing water wires , 2010, Proceedings of the National Academy of Sciences.

[72]  I. Mackenzie,et al.  ALS‐associated fused in sarcoma (FUS) mutations disrupt Transportin‐mediated nuclear import , 2010, The EMBO journal.

[73]  M. Gruebele,et al.  Antifreeze glycoprotein activity correlates with long-range protein-water dynamics. , 2010, Journal of the American Chemical Society.

[74]  Pau Bernadó,et al.  A self-consistent description of the conformational behavior of chemically denatured proteins from NMR and small angle scattering. , 2009, Biophysical journal.

[75]  Sapna Sarupria,et al.  Quantifying water density fluctuations and compressibility of hydration shells of hydrophobic solutes and proteins. , 2009, Physical review letters.

[76]  Martin Gruebele,et al.  An extended dynamical hydration shell around proteins , 2007, Proceedings of the National Academy of Sciences.

[77]  D. Chandler Interfaces and the driving force of hydrophobic assembly , 2005, Nature.

[78]  John E. Bertie,et al.  Infrared Intensities of Liquids XX: The Intensity of the OH Stretching Band of Liquid Water Revisited, and the Best Current Values of the Optical Constants of H2O(l) at 25°C between 15,000 and 1 cm−1 , 1996 .

[79]  Y. Maréchal Infrared spectra of water. I. Effect of temperature and of H/D isotopic dilution , 1991 .