Predicting seasonal influenza epidemics using cross-hemisphere influenza surveillance data and local internet query data

Can early warning systems be developed to predict influenza epidemics? Using Australian influenza surveillance and local internet search query data, this study investigated whether seasonal influenza epidemics in China, the US and the UK can be predicted using empirical time series analysis. Weekly national number of respiratory cases positive for influenza virus infection that were reported to the FluNet surveillance system in Australia, China, the US and the UK were obtained from World Health Organization FluNet surveillance between week 1, 2010, and week 9, 2018. We collected combined search query data for the US and the UK from Google Trends, and for China from Baidu Index. A multivariate seasonal autoregressive integrated moving average model was developed to track influenza epidemics using Australian influenza and local search data. Parameter estimates for this model were generally consistent with the observed values. The inclusion of search metrics improved the performance of the model with high correlation coefficients (China = 0.96, the US = 0.97, the UK = 0.96, p < 0.01) and low Maximum Absolute Percent Error (MAPE) values (China = 16.76, the US = 96.97, the UK = 125.42). This study demonstrates the feasibility of combining (Australia) influenza and local search query data to predict influenza epidemics a different (northern hemisphere) scales.

[1]  Pejman Rohani,et al.  Changing spatial epidemiology of pertussis in continental USA , 2012, Proceedings of the Royal Society B: Biological Sciences.

[2]  H. Burkom,et al.  Syndromic Surveillance: Adapting Innovations to Developing Settings , 2008, PLoS medicine.

[3]  Emily H. Chan,et al.  Global capacity for emerging infectious disease detection , 2010, Proceedings of the National Academy of Sciences.

[4]  Femida Gwadry-Sridhar,et al.  Social Media: A Systematic Review to Understand the Evidence and Application in Infodemiology , 2011, eHealth.

[5]  Hongbing Tao,et al.  Epidemiology and ARIMA model of positive-rate of influenza viruses among children in Wuhan, China: A nine-year retrospective study. , 2018, International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases.

[6]  S. Triple,et al.  Assessment of syndromic surveillance in Europe. , 2011 .

[7]  Kerrie Mengersen,et al.  Using Google Trends and ambient temperature to predict seasonal influenza outbreaks. , 2018, Environment international.

[8]  P. Mahadevan,et al.  An overview , 2007, Journal of Biosciences.

[9]  Wolfgang Lutz,et al.  World Population & Human Capital in the Twenty-first Century: An Overview , 2017 .

[10]  Marc Lipsitch,et al.  Improving the evidence base for decision making during a pandemic: the example of 2009 influenza A/H1N1. , 2011, Biosecurity and bioterrorism : biodefense strategy, practice, and science.

[11]  Colin A. Russell,et al.  The Global Circulation of Seasonal Influenza A (H3N2) Viruses , 2008, Science.

[12]  Bhupal Singh Influenza , 1916, Nature Reviews Disease Primers.

[13]  Zhiwei Xu,et al.  Monitoring Pertussis Infections Using Internet Search Queries , 2017, Scientific Reports.

[14]  P. Young,et al.  Time series analysis, forecasting and control , 1972, IEEE Transactions on Automatic Control.

[15]  Tae Hyun Jung,et al.  Temporal and spatial associations between influenza and asthma hospitalisations in New York City from 2002 to 2012: a longitudinal ecological study , 2018, BMJ Open.

[16]  D. Lazer,et al.  The Parable of Google Flu: Traps in Big Data Analysis , 2014, Science.

[17]  Ron A M Fouchier,et al.  Influenza vaccine strain selection and recent studies on the global migration of seasonal influenza viruses. , 2008, Vaccine.

[18]  Shilu Tong,et al.  Using internet search queries for infectious disease surveillance: screening diseases for suitability , 2014, BMC Infectious Diseases.

[19]  Triple S Project Assessment of syndromic surveillance in Europe , 2011, The Lancet.

[20]  Yang Yang,et al.  Using Baidu Search Index to Predict Dengue Outbreak in China , 2016, Scientific Reports.

[21]  Chris Chatfield,et al.  The Analysis of Time Series: An Introduction , 1981 .

[22]  Evan L. Ray,et al.  Prediction of infectious disease epidemics via weighted density ensembles , 2017, PLoS Comput. Biol..

[23]  Tom Burr,et al.  Modeling emergency department visit patterns for infectious disease complaints: results and application to disease surveillance , 2005, BMC Medical Informatics Decis. Mak..

[24]  Wenbiao Hu,et al.  Role of big data in the early detection of Ebola and other emerging infectious diseases. , 2015, The Lancet. Global health.

[25]  W. Lutz,et al.  World Population & Human Capital in the Twenty-first Century: Executive Summary , 2014 .

[26]  Elizabeth C. Theil,et al.  Epochal Evolution Shapes the Phylodynamics of Interpandemic Influenza A (H3N2) in Humans , 2006, Science.

[27]  Mitsuyoshi Urashima,et al.  A seasonal model to simulate influenza oscillation in Tokyo. , 2003, Japanese journal of infectious diseases.

[28]  Gail M Williams,et al.  Internet-based surveillance systems for monitoring emerging infectious diseases , 2013, The Lancet Infectious Diseases.

[29]  David C. Farrow,et al.  Results from the second year of a collaborative effort to forecast influenza seasons in the United States. , 2018, Epidemics.

[30]  Gwilym M. Jenkins,et al.  Time series analysis, forecasting and control , 1971 .

[31]  J. Dushoff,et al.  Dynamical resonance can account for seasonality of influenza epidemics. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[32]  W. John Boscardin,et al.  Evaluating Google Flu Trends in Latin America: Important Lessons for the Next Phase of Digital Disease Detection , 2017, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[33]  D. Cummings,et al.  Prediction of Dengue Incidence Using Search Query Surveillance , 2011, PLoS neglected tropical diseases.

[34]  Heterogeneous and Dynamic Prevalence of Asymptomatic Influenza Virus Infections , 2016, Emerging infectious diseases.