Hardware-based anti-Brownian electrokinetic trap (ABEL trap) for single molecules: control loop simulations and application to ATP binding stoichiometry in multi-subunit enzymes

The hardware-based Anti-Brownian ELectrokinetic trap (ABEL trap) features a feedback latency as short as 25 μs, suitable for trapping single protein molecules in aqueous solution. The performance of the feedback control loop is analyzed to extract estimates of the position variance for various controller designs. Preliminary data are presented in which the trap is applied to the problem of determining the distribution of numbers of ATP bound for single chaperonin multi-subunit enzymes.

[1]  Andrew J. Berglund,et al.  Feedback Control of Brownian Motion for Single-Particle Fluorescence Spectroscopy , 2007 .

[2]  Brenda MacGibbon,et al.  ON EXACT INFERENCE FOR CHANGE IN A POISSON SEQUENCE , 2001 .

[3]  Robert Huber,et al.  Crystal Structure of the Thermosome, the Archaeal Chaperonin and Homolog of CCT , 1998, Cell.

[4]  W. Moerner,et al.  Controlling Brownian motion of single protein molecules and single fluorophores in aqueous buffer. , 2008, Optics express.

[5]  Hideo Mabuchi,et al.  Feedback controller design for tracking a single fluorescent molecule , 2004 .

[6]  W. Moerner,et al.  Suppressing Brownian motion of individual biomolecules in solution. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[7]  Richard M. Murray,et al.  Feedback Systems An Introduction for Scientists and Engineers , 2007 .

[8]  A. Horovitz,et al.  Review: allostery in chaperonins. , 2001, Journal of structural biology.

[9]  Robert F. Stengel,et al.  Optimal Control and Estimation , 1994 .

[10]  Wah Chiu,et al.  Essential function of the built-in lid in the allosteric regulation of eukaryotic and archaeal chaperonins , 2007, Nature Structural &Molecular Biology.

[11]  W E Moerner,et al.  Single-molecule mountains yield nanoscale cell images , 2006, Nature Methods.

[12]  Benjamin Shapiro,et al.  Arbitrary steering of multiple particles independently in an electro-osmotically driven microfluidic system , 2006, IEEE Transactions on Control Systems Technology.

[13]  Haw Yang,et al.  Quantitative characterization of changes in dynamical behavior for single-particle tracking studies. , 2006, Journal of Physical Chemistry B.

[14]  J. Enderlein Tracking of fluorescent molecules diffusing within membranes , 2000 .

[15]  M.D. Armani,et al.  Using feedback control of microflows to independently steer multiple particles , 2006, Journal of Microelectromechanical Systems.

[16]  Hui Zhang,et al.  Counting of six pRNAs of phi29 DNA‐packaging motor with customized single‐molecule dual‐view system , 2007, The EMBO journal.

[17]  Hideo Mabuchi,et al.  Fluctuations in closed-loop fluorescent particle tracking. , 2007, Optics express.

[18]  Lucas P. Watkins,et al.  Detection of intensity change points in time-resolved single-molecule measurements. , 2005, The journal of physical chemistry. B.

[19]  Haw Yang,et al.  Confocal three dimensional tracking of a single nanoparticle with concurrent spectroscopic readouts , 2006 .

[20]  Angelo Geraci,et al.  Digital field programmable gate array-based lock-in amplifier for high-performance photon counting applications , 2005 .

[21]  Hideo Mabuchi,et al.  Performance bounds on single-particle tracking by fluorescence modulation , 2006 .

[22]  H. Mabuchi,et al.  Tracking-FCS: Fluorescence correlation spectroscopy of individual particles. , 2005, Optics express.

[23]  W. E. Moerner,et al.  Method for trapping and manipulating nanoscale objects in solution , 2005 .