Primates and Cameras

Field-based primate studies often make population inferences using count-based indices (e.g., individuals/plot) or distance sampling; the first does not account for the probability of detection and thus can be biased, while the second requires large sample sizes to obtain precise estimates, which is difficult for many primate studies. We discuss photographic sampling and occupancy modeling to correct for imperfect detection when estimating system states and dynamics at the landscape level, specifically in relation to primate ecology. We highlight the flexibility of the occupancy framework and its many applications to studying low-density primate populations or species that are difficult to detect. We discuss relevant sampling and estimation procedures with special attention to data collection via photographic sampling. To provide tangible meaning to terminology and clarify subtleties, we use illustrative examples. Photographic sampling can have many advantages over observer-based sampling, especially when studying rare or elusive species. Combining photographic sampling with an occupancy framework allows inference to larger scales than is common in primate studies, addresses uncertainty due to the observation process, and allows researchers to examine questions of how landscape-level anthropogenic changes affect primate distributions.

[1]  A. F. O'connell,et al.  Estimating Site Occupancy and Detection Probability Parameters for Meso- And Large Mammals in a Coastal Ecosystem , 2006 .

[2]  Júlio César Bicca-Marques,et al.  Field and laboratory methods in primatology: A practical guide , 2007 .

[3]  Andrew J. Plumptre,et al.  Monitoring mammal populations with line transect techniques in African forests , 2000 .

[4]  R. Hilborn,et al.  The Ecological Detective: Confronting Models with Data , 1997 .

[5]  Stephen T. Buckland,et al.  Line Transect Sampling of Primates: Can Animal-to-Observer Distance Methods Work? , 2010 .

[6]  Darryl I. MacKenzie,et al.  Designing occupancy studies: general advice and allocating survey effort , 2005 .

[7]  James G. Sanderson,et al.  Monitoring mammals in the Caxiuanã National Forest, Brazil – First results from the Tropical Ecology, Assessment and Monitoring (TEAM) program , 2007, Biodiversity and Conservation.

[8]  C. Peres,et al.  Primate conservation in the new millennium: The role of scientists , 2001 .

[9]  Brian D. Gerber,et al.  An assessment of carnivore relative abundance and density in the eastern rainforests of Madagascar using remotely-triggered camera traps , 2010, Oryx.

[10]  David A. W. Miller,et al.  Improving occupancy estimation when two types of observational error occur: non-detection and species misidentification. , 2011, Ecology.

[11]  M. Grijalva,et al.  Modeling Disease Vector Occurrence when Detection Is Imperfect: Infestation of Amazonian Palm Trees by Triatomine Bugs at Three Spatial Scales , 2010, PLoS neglected tropical diseases.

[12]  Andrew Thomas,et al.  The BUGS project: Evolution, critique and future directions , 2009, Statistics in medicine.

[13]  D. Watts Field and Laboratory Methods in Primatology , 2005, International Journal of Primatology.

[14]  James E. Hines,et al.  Occurrence and distribution of Indian primates , 2010 .

[15]  Benjamin L. Richards,et al.  The IUCN Red List of Threatened Species: an assessment of coral reef fishes in the US Pacific Islands , 2013, Coral Reefs.

[16]  M. Cords,et al.  Diurnal primate densities and biomass in the Kakamega Forest: An evaluation of census methods and a comparison with other forests , 2000, American journal of primatology.

[17]  Y. Maho,et al.  The use of stopover sites by Black Storks (Ciconia nigra) migrating between West Europe and West Africa as revealed by satellite telemetry , 2010, Journal of Ornithology.

[18]  D. J. Brus,et al.  Random sampling or geostatistical modelling? Choosing between design-based and model-based sampling strategies for soil (with discussion) , 1997 .

[19]  Linda Vigilant,et al.  Counting elusive animals: Comparing field and genetic census of the entire mountain gorilla population of Bwindi Impenetrable National Park, Uganda , 2009 .

[20]  A. Winsor Sampling techniques. , 2000, Nursing times.

[21]  Darryl I MacKenzie,et al.  Sampling design trade-offs in occupancy studies with imperfect detection: examples and software. , 2007, Ecological applications : a publication of the Ecological Society of America.

[22]  T. Gregoire Design-based and model-based inference in survey sampling: appreciating the difference , 1998 .

[23]  A. A. Y. Adams,et al.  Evaluating Abundance Estimate Precision and the Assumptions of a Count-Based Index for Small Mammals , 2009 .

[24]  Di Bitetti,et al.  Reseña de "Camera Traps in Animal Eecology: Methods and Analyses" de Allan F. O'Connell, James D. Nichols & K. Ullas Karanth (Eds.) , 2011 .

[25]  T. King,et al.  Arboreal camera trapping for the Critically Endangered greater bamboo lemur Prolemur simus , 2012, Oryx.

[26]  K. Burnham,et al.  Comparison of model building and selection strategies , 2010, Journal of Ornithology.

[27]  A. F. O'connell,et al.  Multi-scale occupancy estimation and modelling using multiple detection methods , 2008 .

[28]  J. Andrew Royle,et al.  ESTIMATING ABUNDANCE FROM REPEATED PRESENCE–ABSENCE DATA OR POINT COUNTS , 2003 .

[29]  J. Andrew Royle,et al.  Modelling occurrence and abundance of species when detection is imperfect , 2005 .

[30]  Richard B. Chandler,et al.  unmarked: An R Package for Fitting Hierarchical Models of Wildlife Occurrence and Abundance , 2011 .

[31]  Darryl I. MacKenzie,et al.  Occupancy as a surrogate for abundance estimation , 2004 .

[32]  J. Andrew Royle,et al.  ESTIMATING SITE OCCUPANCY RATES WHEN DETECTION PROBABILITIES ARE LESS THAN ONE , 2002, Ecology.

[33]  José J. Lahoz-Monfort,et al.  Using occupancy as a state variable for monitoring the Critically Endangered Alaotran gentle lemur Hapalemur alaotrensis , 2010 .

[34]  C. D. Vojta OLD DOG, NEW TRICKS: INNOVATIONS WITH PRESENCE–ABSENCE INFORMATION , 2005 .

[35]  D. Dawson,et al.  Occupancy in continuous habitat , 2012 .

[36]  David R. Anderson,et al.  Model selection and multimodel inference : a practical information-theoretic approach , 2003 .

[37]  A. Harcourt,et al.  Species–area relationships of primates in tropical forest fragments: a global analysis , 2005 .

[38]  P. Griffioen,et al.  Using presence-only and presence–absence data to estimate the current and potential distributions of established invasive species , 2011, The Journal of applied ecology.

[39]  J. Ahumada,et al.  Community structure and diversity of tropical forest mammals: data from a global camera trap network , 2011, Philosophical Transactions of the Royal Society B: Biological Sciences.

[40]  H. G. Andrewartha,et al.  The distribution and abundance of animals. , 1954 .

[41]  Stephen T. Buckland,et al.  Design and Analysis of Line Transect Surveys for Primates , 2010, International Journal of Primatology.

[42]  Larissa L. Bailey,et al.  Modeling co-occurrence of northern spotted and barred owls: Accounting for detection probability differences , 2009 .

[43]  R. Barrett,et al.  A History of Camera Trapping , 2011 .

[44]  Steven K. Thompson,et al.  Sampling: Thompson/Sampling 3E , 2012 .

[45]  Ming Li,et al.  Molecular censusing doubles giant panda population estimate in a key nature reserve , 2006, Current Biology.

[46]  J. Nichols,et al.  ESTIMATING SITE OCCUPANCY, COLONIZATION, AND LOCAL EXTINCTION WHEN A SPECIES IS DETECTED IMPERFECTLY , 2003 .

[47]  T. Arnold,et al.  Considerations for using occupancy surveys to monitor forest primates: a case study with Sclater’s monkey (Cercopithecus sclateri) , 2011, Population Ecology.

[48]  J. Andrew Royle,et al.  Hierarchical Modeling and Inference in Ecology: The Analysis of Data from Populations, Metapopulations and Communities , 2008 .

[49]  Brian D. Gerber,et al.  The impact of forest logging and fragmentation on carnivore species composition, density and occupancy in Madagascar's rainforests , 2012, Oryx.

[50]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .

[51]  James D. Nichols,et al.  Capture-recapture models. , 1992 .

[52]  R. Little To Model or Not To Model? Competing Modes of Inference for Finite Population Sampling , 2004 .

[53]  J Andrew Royle,et al.  Generalized site occupancy models allowing for false positive and false negative errors. , 2006, Ecology.

[54]  K. Burnham,et al.  Program MARK: survival estimation from populations of marked animals , 1999 .

[55]  William L. Kendall,et al.  A cautionary note on substituting spatial subunits for repeated temporal sampling in studies of site occupancy , 2009 .

[56]  David R. Anderson,et al.  Model selection bias and Freedman’s paradox , 2010 .

[57]  J. Brashares,et al.  Hierarchical Multi-Species Modeling of Carnivore Responses to Hunting, Habitat and Prey in a West African Protected Area , 2012, PloS one.

[58]  R. Jenkins,et al.  The potential of occupancy modelling as a tool for monitoring wild primate populations , 2012 .

[59]  Guy Cowlishaw,et al.  Primate Conservation Biology , 2000 .

[60]  N. Reeve Survey and census methods: population distribution and density , 2003 .

[61]  N. Yoccoz Occupancy Estimation and Modeling. Inferring patterns and dynamics of species occurrence , 2006 .

[62]  A. F. O'connell,et al.  Camera traps in animal ecology : methods and analyses , 2011 .

[63]  S. S. Stevens,et al.  Noninvasive Survey Methods for Carnivores , 2010 .

[64]  M. Ruiz Espejo Sampling , 2013, Encyclopedic Dictionary of Archaeology.