Analyzing the dynamics of complex excitation wave patterns in cardiac tissue plays a key role for understanding the origin of life-threatening arrhythmias and for devising novel approaches to control them. The quantification of spatiotemporal complexity, however, remains a challenging task. This holds in particular for the analysis of data from fluorescence imaging (optical mapping), which allows for the measurement of membrane potential and intracellular calcium at high spatial and temporal resolution. Hitherto methods, like dominant frequency maps and the analysis of phase singularities, address important aspects of cardiac dynamics, but they consider very specific properties of excitable media, only. This article focuses on the benchmark of spatial complexity measures over time in the context of cardiac cell cultures. Standard Shannon Entropy and Spatial Permutation Entropy, an adaption of [1], have been implemented and applied to optical mapping data from embryonic chicken cell culture experiments. We introduce spatial separation of samples when generating ordinal patterns and show its importance for Spatial Permutation Entropy. Results suggest that Spatial Permutation Entropies provide a robust and interpretable measure for detecting qualitative changes in the dynamics of this excitable medium.
[1]
José Amigó,et al.
Permutation Complexity in Dynamical Systems
,
2010
.
[2]
L. Glass,et al.
Pacemaker interactions induce reentrant wave dynamics in engineered cardiac culture.
,
2012,
Chaos.
[3]
Ulrich Parlitz,et al.
Entropy Rate Maps of Complex Excitable Dynamics in Cardiac Monolayers
,
2015,
Entropy.
[4]
William H. Press,et al.
Numerical Recipes 3rd Edition: The Art of Scientific Computing
,
2007
.
[5]
Niels Wessel,et al.
Classifying cardiac biosignals using ordinal pattern statistics and symbolic dynamics
,
2012,
Comput. Biol. Medicine.
[6]
C. E. SHANNON,et al.
A mathematical theory of communication
,
1948,
MOCO.
[7]
B. Pompe,et al.
Permutation entropy: a natural complexity measure for time series.
,
2002,
Physical review letters.
[8]
S. Luther,et al.
Eliminating pinned spiral waves in cardiac monolayer by far field pacing
,
2014,
2014 8th Conference of the European Study Group on Cardiovascular Oscillations (ESGCO).
[9]
E. K. Lenzi,et al.
Complexity-Entropy Causality Plane as a Complexity Measure for Two-Dimensional Patterns
,
2012,
PloS one.