Structural determinants of limited proteolysis.
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Ying Zhang | Adam Godzik | Piotr Cieplak | Andrei L Osterman | Yoshinobu Igarashi | Boris Ratnikov | Jeffrey W. Smith | Zhanwen Li | A. Godzik | P. Cieplak | A. Osterman | M. Kazanov | Ying Zhang | Zhanwen Li | Yoshinobu Igarashi | A. Eroshkin | B. Ratnikov | Jeffrey W Smith | Marat D Kazanov | Alexey M Eroshkin
[1] Chih-Jen Lin,et al. LIBSVM: A library for support vector machines , 2011, TIST.
[2] Christopher M Overall,et al. Identification of proteolytic products and natural protein N-termini by Terminal Amine Isotopic Labeling of Substrates (TAILS). , 2011, Methods in molecular biology.
[3] G. Salvesen,et al. N-terminomics: a high-content screen for protease substrates and their cleavage sites. , 2011, Methods in molecular biology.
[4] Ursula Pieper,et al. Prediction of protease substrates using sequence and structure features , 2010, Bioinform..
[5] N. Bovenschen,et al. Proteomic profiling of proteases: tools for granzyme degradomics , 2010, Expert review of proteomics.
[6] C. Overall,et al. Multiplex N-terminome Analysis of MMP-2 and MMP-9 Substrate Degradomes by iTRAQ-TAILS Quantitative Proteomics* , 2010, Molecular & Cellular Proteomics.
[7] Geoffrey I. Webb,et al. Cascleave: towards more accurate prediction of caspase substrate cleavage sites , 2010, Bioinform..
[8] Vasile Palade,et al. A New Performance Measure for Class Imbalance Learning. Application to Bioinformatics Problems , 2009, 2009 International Conference on Machine Learning and Applications.
[9] G. Salvesen,et al. Structural and kinetic determinants of protease substrates , 2009, Nature Structural &Molecular Biology.
[10] Ines Thiele,et al. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima , 2009, Science.
[11] Haruki Nakamura,et al. Data Deposition and Annotation at the Worldwide Protein Data Bank , 2009, Molecular biotechnology.
[12] Yang Zhang. Protein structure prediction: when is it useful? , 2009, Current opinion in structural biology.
[13] Bartek Wilczynski,et al. Biopython: freely available Python tools for computational molecular biology and bioinformatics , 2009, Bioinform..
[14] S. Maurer-Stroh,et al. Analysis of Protein Processing by N-terminal Proteomics Reveals Novel Species-specific Substrate Determinants of Granzyme B Orthologs *S , 2009, Molecular & Cellular Proteomics.
[15] C. López-Otín,et al. Proteases: Multifunctional Enzymes in Life and Disease* , 2008, Journal of Biological Chemistry.
[16] David T. Barkan,et al. Global Sequencing of Proteolytic Cleavage Sites in Apoptosis by Specific Labeling of Protein N Termini , 2008, Cell.
[17] Oliver Schilling,et al. Proteome-derived, database-searchable peptide libraries for identifying protease cleavage sites , 2008, Nature Biotechnology.
[18] Yang Zhang. Progress and challenges in protein structure prediction. , 2008, Current opinion in structural biology.
[19] Adam Godzik,et al. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. , 2007, Structure.
[20] M. Wilkins,et al. Surface accessibility of protein post-translational modifications. , 2007, Journal of proteome research.
[21] S. Diamond. Methods for mapping protease specificity. , 2007, Current opinion in chemical biology.
[22] Jeffrey W. Smith,et al. CutDB: a proteolytic event database , 2006, Nucleic Acids Res..
[23] Tin Wee Tan,et al. SVM-based prediction of caspase substrate cleavage sites , 2006, BMC Bioinformatics.
[24] B. Turk. Targeting proteases: successes, failures and future prospects , 2006, Nature Reviews Drug Discovery.
[25] C. Craik,et al. Specificity Profiling of Seven Human Tissue Kallikreins Reveals Individual Subsite Preferences* , 2006, Journal of Biological Chemistry.
[26] Tom Fawcett,et al. An introduction to ROC analysis , 2006, Pattern Recognit. Lett..
[27] Masoud Nikravesh,et al. Feature Extraction - Foundations and Applications , 2006, Feature Extraction.
[28] Christina Backes,et al. GraBCas: a bioinformatics tool for score-based prediction of Caspase- and Granzyme B-cleavage sites in protein sequences , 2005, Nucleic Acids Res..
[29] Conrad C. Huang,et al. UCSF Chimera—A visualization system for exploratory research and analysis , 2004, J. Comput. Chem..
[30] Bernard F. Buxton,et al. The DISOPRED server for the prediction of protein disorder , 2004, Bioinform..
[31] Aleksey Porollo,et al. PROTEINS: Structure, Function, and Bioinformatics 56:753–767 (2004) Accurate Prediction of Solvent Accessibility Using Neural Networks–Based Regression , 2022 .
[32] P. Ascenzi,et al. Proteolytic activity of bovine lactoferrin , 2004, Biometals.
[33] P. Ascenzi,et al. Erratum: Proteolytic activity of bovine lactoferrin (Biometals 17 (249-255)) , 2004 .
[34] Jun Kong,et al. MEROPS: the peptidase database. , 2004, Nucleic acids research.
[35] James C. Whisstock,et al. PoPS: a computational tool for modeling and predicting protease specificity , 2004, Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004. CSB 2004..
[36] Haruki Nakamura,et al. Announcing the worldwide Protein Data Bank , 2003, Nature Structural Biology.
[37] L. Juliano,et al. S3 to S3' subsite specificity of recombinant human cathepsin K and development of selective internally quenched fluorescent substrates. , 2003, The Biochemical journal.
[38] X. Puente,et al. Human and mouse proteases: a comparative genomic approach , 2003, Nature Reviews Genetics.
[39] Foster J. Provost,et al. Learning When Training Data are Costly: The Effect of Class Distribution on Tree Induction , 2003, J. Artif. Intell. Res..
[40] Oliviero Carugo,et al. DPX: for the analysis of the protein core , 2003, Bioinform..
[41] C. Overall. Molecular determinants of metalloproteinase substrate specificity , 2002, Molecular biotechnology.
[42] Jotun Hein,et al. Statistical Methods in Bioinformatics: An Introduction , 2002 .
[43] C. López-Otín,et al. Protease degradomics: A new challenge for proteomics , 2002, Nature Reviews Molecular Cell Biology.
[44] Oliviero Carugo,et al. CX, an algorithm that identifies protruding atoms in proteins , 2002, Bioinform..
[45] K. Fang,et al. Mast Cell α-Chymase Reduces IgE Recognition of Birch Pollen Profilin by Cleaving Antibody-Binding Epitopes1 , 2002, The Journal of Immunology.
[46] L. Cantley,et al. Determination of protease cleavage site motifs using mixture-based oriented peptide libraries , 2001, Nature Biotechnology.
[47] Paul Schliekelman,et al. Statistical Methods in Bioinformatics: An Introduction , 2001 .
[48] Gregory R. Grant,et al. Statistical Methods in Bioinformatics , 2001 .
[49] Liam J. McGuffin,et al. The PSIPRED protein structure prediction server , 2000, Bioinform..
[50] J M Thornton,et al. Assessment of conformational parameters as predictors of limited proteolytic sites in native protein structures. , 1998, Protein engineering.
[51] S. Parthasarathy,et al. Analysis of temperature factor distribution in high‐resolution protein structures , 1997, Protein science : a publication of the Protein Society.
[52] D. Bredesen,et al. Cleavage of actin by interleukin 1 beta-converting enzyme to reverse DNase I inhibition. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[53] M. Sanner,et al. Reduced surface: an efficient way to compute molecular surfaces. , 1996, Biopolymers.
[54] K Fidelis,et al. A large‐scale experiment to assess protein structure prediction methods , 1995, Proteins.
[55] T. Wilkins,et al. The enterotoxin of Bacteroides fragilis is a metalloprotease , 1995, Infection and immunity.
[56] J M Thornton,et al. Modeling studies of the change in conformation required for cleavage of limited proteolytic sites , 1994, Protein science : a publication of the Protein Society.
[57] J M Thornton,et al. Molecular recognition. Conformational analysis of limited proteolytic sites and serine proteinase protein inhibitors. , 1991, Journal of molecular biology.
[58] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[59] R. Bruccoleri,et al. Correlation among sites of limited proteolysis, enzyme accessibility and segmental mobility , 1987, FEBS letters.
[60] K. Nishikawa,et al. Radial locations of amino acid residues in a globular protein: correlation with the sequence. , 1986, Journal of biochemistry.
[61] M. Zamai,et al. Correlation between sites of limited proteolysis and segmental mobility in thermolysin. , 1986, Biochemistry.
[62] W. Kabsch,et al. Dictionary of protein secondary structure: Pattern recognition of hydrogen‐bonded and geometrical features , 1983, Biopolymers.
[63] H. Jörnvall,et al. The site in human antithrombin for functional proteolytic cleavage by human thrombin , 1981, FEBS letters.
[64] Sirpa Mäki,et al. The computer program , 1980 .
[65] A. Berger,et al. On the active site of proteases. 3. Mapping the active site of papain; specific peptide inhibitors of papain. , 1968, Biochemical and biophysical research communications.
[66] E. Davie,et al. Identification of a peptide released during autocatalytic activation of trypsinogen. , 1955, The Journal of biological chemistry.