Deep ancestry of Bornean hunter-gatherers supports long-term local ancestry dynamics.

[1]  D. Reich,et al.  On the limits of fitting complex models of population history to f-statistics , 2023, eLife.

[2]  Sean S. Downey,et al.  Deep ancestry of collapsing networks of nomadic hunter–gatherers in Borneo , 2022, Evolutionary Human Sciences.

[3]  Suryatman,et al.  Genome of a middle Holocene hunter-gatherer from Wallacea , 2021, Nature.

[4]  Carina M. Schlebusch,et al.  Multiple migrations to the Philippines during the last 50,000 years , 2021, Proceedings of the National Academy of Sciences.

[5]  Ryan W. Schmidt,et al.  Ancient Jomon genome sequence analysis sheds light on migration patterns of early East Asian populations , 2020, Communications Biology.

[6]  Mark Lipson.  Applying f4‐statistics and admixture graphs: Theory and examples , 2020, Molecular ecology resources.

[7]  D. Reich,et al.  Ancient DNA indicates human population shifts and admixture in northern and southern China , 2020, Science.

[8]  J. Stephen Lansing,et al.  Multiple Deeply Divergent Denisovan Ancestries in Papuans , 2019, Cell.

[9]  Jared O'Connell,et al.  Tracking human population structure through time from whole genome sequences , 2019, bioRxiv.

[10]  Priyatno Hadi Sulistyarto,et al.  Palaeolithic cave art in Borneo , 2018, Nature.

[11]  S. Rasmussen,et al.  The prehistoric peopling of Southeast Asia , 2018, Science.

[12]  Shuhua Xu,et al.  Genetic relatedness of indigenous ethnic groups in northern Borneo to neighboring populations from Southeast Asia, as inferred from genome‐wide SNP data , 2018, Annals of human genetics.

[13]  C. Hunt,et al.  The ‘cultured rainforests’ of Borneo , 2017 .

[14]  Yun Sung Cho,et al.  Genome-wide data from two early Neolithic East Asian individuals dating to 7700 years ago , 2017, Science Advances.

[15]  Jonathan Scott Friedlaender,et al.  Ancient Genomics and the Peopling of the Southwest Pacific , 2016, Nature.

[16]  Yun S. Song,et al.  The Simons Genome Diversity Project: 300 genomes from 142 diverse populations , 2016, Nature.

[17]  P. Taçon,et al.  Deep Skull from Niah Cave and the Pleistocene Peopling of Southeast Asia , 2016, Front. Ecol. Evol..

[18]  L. Pagani,et al.  Multi-layered population structure in Island Southeast Asians , 2016, European Journal of Human Genetics.

[19]  S. Shennan,et al.  Transition to farming more likely for small, conservative groups with property rights, but increased productivity is not essential , 2015, Proceedings of the National Academy of Sciences.

[20]  Po-Ru Loh,et al.  Fast and accurate long-range phasing in a UK Biobank cohort , 2015, Nature Genetics.

[21]  Carson C Chow,et al.  Second-generation PLINK: rising to the challenge of larger and richer datasets , 2014, GigaScience.

[22]  B. Berger,et al.  Reconstructing Austronesian population history in Island Southeast Asia , 2014, Nature Communications.

[23]  R. Durbin,et al.  Inferring human population size and separation history from multiple genome sequences , 2014, Nature Genetics.

[24]  L. Pagani,et al.  Genome-wide evidence of Austronesian–Bantu admixture and cultural reversion in a hunter-gatherer group of Madagascar , 2014, Proceedings of the National Academy of Sciences.

[25]  E. Thompson.  Identity by Descent: Variation in Meiosis, Across Genomes, and in Populations , 2013, Genetics.

[26]  B. Browning,et al.  Improving the Accuracy and Efficiency of Identity-by-Descent Detection in Population Data , 2013, Genetics.

[27]  David Levine,et al.  A high-performance computing toolset for relatedness and principal component analysis of SNP data , 2012, Bioinform..

[28]  Joseph K. Pickrell,et al.  Inferring Admixture Histories of Human Populations Using Linkage Disequilibrium , 2012, Genetics.

[29]  Swapan Mallick,et al.  Ancient Admixture in Human History , 2012, Genetics.

[30]  M. Stoneking,et al.  Evolutionary history of continental southeast Asians: "early train" hypothesis based on genetic analysis of mitochondrial and autosomal DNA data. , 2012, Molecular biology and evolution.

[31]  Joseph K. Pickrell,et al.  Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data , 2012, PLoS genetics.

[32]  David Reich,et al.  Testing for ancient admixture between closely related populations. , 2011, Molecular biology and evolution.

[33]  R. Blench.  Was there an Austroasiatic Presence in Island Southeast Asia prior to the Austronesian Expansion , 2011 .

[34]  Josyf Mychaleckyj,et al.  Robust relationship inference in genome-wide association studies , 2010, Bioinform..

[35]  Robert Blust.  The Greater North Borneo Hypothesis , 2010 .

[36]  David H. Alexander,et al.  Fast model-based estimation of ancestry in unrelated individuals. , 2009, Genome research.

[37]  Noah A. Rosenberg,et al.  CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure , 2007, Bioinform..

[38]  P. Levang,et al.  City life in the midst of the forest: a Punan hunter-gatherer’s vision of conservation and development , 2007 .

[39]  C. Sather.  Sea Nomads and Rainforest Hunter-Gatherers: Foraging Adaptations in the Indo-Malaysian Archipelago , 2006 .

[40]  K. Adelaar.  Chapter 4. Borneo as a Cross-Roads for Comparative Austronesian Linguistics , 2006 .

[41]  Richard M. Smith,et al.  Diets in Transition: Hunter-Gatherer to Station Diet and Station Diet to the Self-Select Store Diet , 1999 .

[42]  Bernard Sellato.  Myth, History and Modern Cultural Identity Among Hunter-Gatherers: A Borneo Case , 1993, Journal of Southeast Asian Studies.

[43]  J. Brosius.  Foraging in tropical rain forests: The case of the penan of Sarawak, East Malaysia (Borneo) , 1991 .

[44]  Jessica Manser.  Morphological Analysis of the Human Burial Series at Niah Cave: Implications for Late Pleistocene-Holocene Southeast Asian Human Evolution , 2008 .

[45]  Mika Okushima.  Ethnohistory of the Kayanic Peoples in Northeast Borneo (Part 2): Expansion, Regional Alliance Groups, and Segai Disturbances in the Colonial Era , 2008 .

[46]  A. Guerreiro.  A Rejoinder to Herwig Zahorka's "Basap Cave Dwellers in Mangkalihat" and Some Additional Notes on the Basap and Resettlement in East Kalimantan , 2004 .

[47]  W. Solheim.  The Nusantao Hypothesis: The Origin and Spread of Austronesian Speakers , 1988 .

[48]  M. Feldman,et al.  Supporting Online Material Materials and Methods Figs. S1 to S3 Tables S1 to S5 References Worldwide Human Relationships Inferred from Genome-wide Patterns of Variation , 2022 .