SERS detection of hepatitis B virus DNA in a temperature-responsive sandwich-hybridization assay

In this study, we report the design of a DNA sensor for the detection of a DNA sequence representative of the hepatitis B virus (HBV) based on a sandwich assay and surface-enhanced Raman scattering (SERS) measurement. The temperature-responsive hybrid silicon substrate was first prepared via immobilization of capture DNA strand at the surface of gold nanoparticles on the hybrid silicon substrate. A sandwich strategy was then applied for the detection of target DNA that brings a reporter DNA labeled with indocyanine green to the proximity of the surface, leading to high SERS signals. The temperature-responsive hybrid silicon substrate-based SERS platform can detect the remarkably lowest HBV DNA concentrations at ~0.44 fm at 25 °C and ~0.14 fm at 37 °C, respectively, which are comparable with the lowest HBV DNA concentration ever via other techniques. We expect this highly sensitive and robust hybrid silicon substrate-based SERS platform can be extended to detect other biomolecules and chemical species such as viruses, proteins, and small molecules without any labeling. Copyright © 2017 John Wiley & Sons, Ltd.

[1]  Hyunhyub Ko,et al.  Porous substrates for label-free molecular level detection of nonresonant organic molecules. , 2009, ACS nano.

[2]  Lin He,et al.  Colloidal Au-Enhanced Surface Plasmon Resonance for Ultrasensitive Detection of DNA Hybridization , 2000 .

[3]  A. Hohenau,et al.  Thermo-induced electromagnetic coupling in gold/polymer hybrid plasmonic structures probed by surface-enhanced raman scattering. , 2010, ACS nano.

[4]  Hyunhyub Ko,et al.  Nanostructured surfaces and assemblies as SERS media. , 2008, Small.

[5]  Yi Wang,et al.  QDs-DNA nanosensor for the detection of hepatitis B virus DNA and the single-base mutants. , 2010, Biosensors & bioelectronics.

[6]  D. Lavanchy,et al.  Hepatitis B virus epidemiology, disease burden, treatment, and current and emerging prevention and control measures , 2004, Journal of viral hepatitis.

[7]  Wei Xu,et al.  Ultrasensitive colorimetric DNA detection using a combination of rolling circle amplification and nicking endonuclease-assisted nanoparticle amplification (NEANA). , 2012, Small.

[8]  J. E. Mattson,et al.  A Group-IV Ferromagnetic Semiconductor: MnxGe1−x , 2002, Science.

[9]  C. Mirkin,et al.  Array-Based Electrical Detection of DNA with Nanoparticle Probes , 2002, Science.

[10]  Liyuan Ma,et al.  Scanning calorimetric detections of multiple DNA biomarkers contained in complex fluids. , 2010, Analytical Chemistry.

[11]  R. Corn,et al.  Surface plasmon resonance imaging measurements of DNA and RNA hybridization adsorption onto DNA microarrays. , 2001, Analytical chemistry.

[12]  U. Tamer,et al.  A new plasmonic device made of gold nanoparticles and temperature responsive polymer brush on a silicon substrate. , 2015, Journal of colloid and interface science.

[13]  Steven R. Emory,et al.  Probing Single Molecules and Single Nanoparticles by Surface-Enhanced Raman Scattering , 1997, Science.

[14]  S. Nie,et al.  Stimuli-responsive SERS nanoparticles: conformational control of plasmonic coupling and surface Raman enhancement. , 2009, Journal of the American Chemical Society.

[15]  J. Kimling,et al.  Turkevich method for gold nanoparticle synthesis revisited. , 2006, The journal of physical chemistry. B.

[16]  Ryan J. White,et al.  An electrochemical supersandwich assay for sensitive and selective DNA detection in complex matrices. , 2010, Journal of the American Chemical Society.

[17]  Luis M Liz-Marzán,et al.  Au@pNIPAM colloids as molecular traps for surface-enhanced, spectroscopic, ultra-sensitive analysis. , 2009, Angewandte Chemie.

[18]  Martin Moskovits,et al.  Label-Free SERS Detection of Small Proteins Modified to Act as Bifunctional Linkers. , 2008, The journal of physical chemistry. C, Nanomaterials and interfaces.

[19]  Luis M Liz-Marzán,et al.  Recyclable molecular trapping and SERS detection in silver-loaded agarose gels with dynamic hot spots. , 2009, Analytical chemistry.

[20]  U. Tamer,et al.  A SERS-based sandwich assay for ultrasensitive and selective detection of Alzheimer's tau protein. , 2013, Biomacromolecules.

[21]  E. Yıldırım,et al.  RAFT‐mediated synthesis and temperature‐induced responsive properties of poly(2‐(2‐methoxyethoxy)ethyl methacrylate) brushes , 2013 .