Wastewater surveillance of SARS-CoV-2 genomic populations on a country-wide scale through targeted sequencing
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L. Borzacconi | C. Etchebehere | G. Botto | Florencia Cancela | N. Ramos | S. Mirazo | C. Rufo | M. Trujillo | M. Berois | D. Smyth | Jesica Rodríguez | A. Alemán | Starla G Thornhill | J. López | Elizabeth González
[1] Marc C. Johnson,et al. Genetic diversity and evolutionary convergence of cryptic SARS- CoV-2 lineages detected via wastewater sequencing , 2022, PLoS pathogens.
[2] Bernat Joseph-Duran,et al. Assessing wastewater-based epidemiology for the prediction of SARS-CoV-2 incidence in Catalonia , 2022, Scientific Reports.
[3] W. Rauch,et al. Viral variant-resolved wastewater surveillance of SARS-CoV-2 at national scale. , 2022, Nature biotechnology.
[4] Christine M. Aceves,et al. Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission , 2022, Nature.
[5] S. Wuertz,et al. Making waves: Wastewater surveillance of SARS-CoV-2 in an endemic future , 2022, Water Research.
[6] Y. Mokhayeri,et al. SARS-COV-2 RBD (Receptor binding domain) mutations and variants (A sectional-analytical study) , 2022, Microbial Pathogenesis.
[7] Prosun Bhattacharya,et al. Lead time of early warning by wastewater surveillance for COVID-19: Geographical variations and impacting factors , 2022, Chemical Engineering Journal.
[8] J. Rigg,et al. Selective border permeability: Governing complex environmental issues through and beyond COVID-19 , 2022, Political Geography.
[9] F. Kirchhoff,et al. Omicron: What Makes the Latest SARS-CoV-2 Variant of Concern So Concerning? , 2022, Journal of virology.
[10] S. Olesen,et al. Wastewater network infrastructure in public health: Applications and learnings from the COVID-19 pandemic , 2021, PLOS global public health.
[11] F. Fratev. N501Y and K417N Mutations in the Spike Protein of SARS-CoV-2 Alter the Interactions with Both hACE2 and Human-Derived Antibody: A Free Energy of Perturbation Retrospective Study , 2021, J. Chem. Inf. Model..
[12] A. Michos,et al. SARS-CoV-2 variants and effectiveness of vaccines: a review of current evidence , 2021, Epidemiology and Infection.
[13] S. Manara,et al. Surveillance of SARS-CoV-2 in extensive monitoring of municipal wastewater: key issues to yield reliable results. , 2021, Water science and technology : a journal of the International Association on Water Pollution Research.
[14] A. Aalto,et al. Model-based assessment of COVID-19 epidemic dynamics by wastewater analysis , 2021, Science of The Total Environment.
[15] K. Fukushi,et al. Wastewater-Based Epidemiology for Cost-Effective Mass Surveillance of COVID-19 in Low- and Middle-Income Countries: Challenges and Opportunities , 2021, Water.
[16] Philip L. Tzou,et al. The biological and clinical significance of emerging SARS-CoV-2 variants , 2021, Nature Reviews Genetics.
[17] Wiley C Jennings,et al. Using Wastewater Surveillance Data to Support the COVID-19 Response — United States, 2020–2021 , 2021, MMWR. Morbidity and mortality weekly report.
[18] G. Iraola,et al. Emergence and Spread of a B.1.1.28-Derived P.6 Lineage with Q675H and Q677H Spike Mutations in Uruguay , 2021, Viruses.
[19] G. Iraola,et al. Real-Time Genomic Surveillance for SARS-CoV-2 Variants of Concern, Uruguay , 2021, Emerging infectious diseases.
[20] Peng Zheng,et al. N501Y mutation of spike protein in SARS-CoV-2 strengthens its binding to receptor ACE2 , 2021, eLife.
[21] E. Sokurenko,et al. Acquisition of the L452R Mutation in the ACE2-Binding Interface of Spike Protein Triggers Recent Massive Expansion of SARS-CoV-2 Variants , 2021, Journal of clinical microbiology.
[22] J. Dennehy,et al. Tracking cryptic SARS-CoV-2 lineages detected in NYC wastewater , 2021, Nature Communications.
[23] Marc C. Johnson,et al. Monitoring SARS-CoV-2 Populations in Wastewater by Amplicon Sequencing and Using the Novel Program SAM Refiner , 2021, medRxiv.
[24] F. Giorgi,et al. Preliminary report on severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2) Spike mutation T478K , 2021, Journal of Medical Virology.
[25] N. Goñi,et al. Genome Sequences of SARS-CoV-2 P.1 (Variant of Concern) and P.2 (Variant of Interest) Identified in Uruguay , 2021, Microbiology resource announcements.
[26] Orin C. Shanks,et al. Minimizing errors in RT-PCR detection and quantification of SARS-CoV-2 RNA for wastewater surveillance , 2021, Science of The Total Environment.
[27] A. García-Sastre,et al. SARS-CoV-2 spike E484K mutation reduces antibody neutralisation , 2021, The Lancet Microbe.
[28] A. T. Vasconcelos,et al. Genomic surveillance of SARS-CoV-2 tracks early interstate transmission of P.1 lineage and diversification within P.2 clade in Brazil , 2021, medRxiv.
[29] Karin J. Metzner,et al. V-pipe: a computational pipeline for assessing viral genetic diversity from high-throughput data , 2021, Bioinform..
[30] L. Spangenberg,et al. Recurrent Dissemination of SARS-CoV-2 Through the Uruguayan–Brazilian Border , 2021, Frontiers in Microbiology.
[31] T. Vergara,et al. The COVID-19 second wave: A perspective to be explored , 2020, The Brazilian Journal of Infectious Diseases.
[32] Matthew T. Maurano,et al. SARS-CoV-2 genomic characterization and clinical manifestation of the COVID-19 outbreak in Uruguay , 2020, Emerging microbes & infections.
[33] G. Sánchez,et al. Comparing analytical methods to detect SARS-CoV-2 in wastewater , 2020, Science of The Total Environment.
[34] K. Bibby,et al. SARS-CoV-2 RNA monitoring in wastewater as a potential early warning system for COVID-19 transmission in the community: A temporal case study , 2020, Science of The Total Environment.
[35] Vineet D. Menachery,et al. Spike mutation D614G alters SARS-CoV-2 fitness , 2020, Nature.
[36] J. Banfield,et al. Genome Sequencing of Sewage Detects Regionally Prevalent SARS-CoV-2 Variants , 2020, mBio.
[37] Vineet D. Menachery,et al. Spike mutation D614G alters SARS-CoV-2 fitness and neutralization susceptibility , 2020, Nature.
[38] R. Sanjuán,et al. Metropolitan wastewater analysis for COVID-19 epidemiological surveillance , 2020, International Journal of Hygiene and Environmental Health.
[39] Claire Duvallet,et al. SARS-CoV-2 Titers in Wastewater Are Higher than Expected from Clinically Confirmed Cases , 2020, mSystems.
[40] A. M. de Roda Husman,et al. SARS-CoV-2 in wastewater: potential health risk, but also data source , 2020, The Lancet Gastroenterology & Hepatology.
[41] Findlay Bewicke-Copley,et al. Applications and analysis of targeted genomic sequencing in cancer studies , 2019, Computational and structural biotechnology journal.
[42] A. Wilm,et al. LoFreq: a sequence-quality aware, ultra-sensitive variant caller for uncovering cell-population heterogeneity from high-throughput sequencing datasets , 2012, Nucleic acids research.