Identifying differentially methylated genes using mixed effect and generalized least square models
暂无分享,去创建一个
Pearlly Yan | Tim Hui-Ming Huang | Shili Lin | Shuying Sun | Shuying Sun | Shili Lin | T. Huang | P. Yan
[1] Wen-Lin Kuo,et al. A collection of breast cancer cell lines for the study of functionally distinct cancer subtypes. , 2006, Cancer cell.
[2] Tim Hui-Ming Huang,et al. Applications of CpG island microarrays for high-throughput analysis of DNA methylation. , 2002, The Journal of nutrition.
[3] Sandya Liyanarachchi,et al. Breast cancer-associated fibroblasts confer AKT1-mediated epigenetic silencing of Cystatin M in epithelial cells. , 2008, Cancer research.
[4] Carsten Denkert,et al. Hyperactivation of the insulin-like growth factor receptor I signaling pathway is an essential event for cisplatin resistance of ovarian cancer cells. , 2009, Cancer research.
[5] T. Huang,et al. Methylation profiling of CpG islands in human breast cancer cells. , 1999, Human molecular genetics.
[6] J. Gray,et al. Gamma-Normal-Gamma Mixture Model for Detecting Differentially Methylated Loci in Three Breast Cancer Cell Lines , 2007, Cancer informatics.
[7] Tim Hui-Ming Huang,et al. Differential Methylation Hybridization Array of Endometrial Cancers Reveals Two Novel Cancer-Specific Methylation Markers , 2007, Clinical Cancer Research.
[8] Peter A. Jones,et al. The Epigenomics of Cancer , 2007, Cell.
[9] Stephan Preibisch,et al. Specific and nonspecific hybridization of oligonucleotide probes on microarrays. , 2004, Biophysical journal.
[10] Shicai Fan,et al. CpG island methylation pattern in different human tissues and its correlation with gene expression. , 2009, Biochemical and biophysical research communications.
[11] David Edwards,et al. Non-linear Normalization and Background Correction in One-channel CDNA Microarray Studies , 2003, Bioinform..
[12] Jian Su,et al. The -271 G>A polymorphism of kinase insert domain-containing receptor gene regulates its transcription level in patients with non-small cell lung cancer , 2009, BMC Cancer.
[13] Li Hsu,et al. Tissue-specific variation in DNA methylation levels along human chromosome 1 , 2009, Epigenetics & Chromatin.
[14] E. Levanon,et al. Human housekeeping genes are compact. , 2003, Trends in genetics : TIG.
[15] J. Rogers,et al. DNA methylation profiling of human chromosomes 6, 20 and 22 , 2006, Nature Genetics.
[16] Yee Hwa Yang,et al. Normalization for two-color cDNA microarray data , 2003 .
[17] D. Delia,et al. Role of erythropoietin receptor expression in malignant melanoma , 2008 .
[18] Igor Zwir,et al. Profile analysis and prediction of tissue-specific CpG island methylation classes , 2009, BMC Bioinformatics.
[19] D. Bates,et al. Mixed-Effects Models in S and S-PLUS , 2001 .
[20] Henrik Bjørn Nielsen,et al. Improving comparability between microarray probe signals by thermodynamic intensity correction. , 2007, Nucleic acids research.
[21] Y. Benjamini,et al. Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .
[22] Xue-lin Zhang,et al. [Evaluation of angiogenesis in the tumorigenesis and progression of breast cancer]. , 2009, Zhonghua wai ke za zhi [Chinese journal of surgery].
[23] Joel Greshock,et al. Integrative Genomic Analysis of Phosphatidylinositol 3′-Kinase Family Identifies PIK3R3 as a Potential Therapeutic Target in Epithelial Ovarian Cancer , 2007, Clinical Cancer Research.
[24] W. Kamps,et al. Evidence Based Selection of Housekeeping Genes , 2007, PloS one.
[25] J. Castle,et al. Definition, conservation and epigenetics of housekeeping and tissue-enriched genes , 2009, BMC Genomics.
[26] Yu-Quan Wei,et al. Genetic Vaccines and Therapy , 2009 .
[27] Hongzhe Li,et al. A Markov random field model for network-based analysis of genomic data , 2007, Bioinform..
[28] C. Li,et al. Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[29] E. Sauter,et al. Quantitative evaluation of DNA hypermethylation in malignant and benign breast tissue and fluids , 2010, International journal of cancer.
[30] Rafael A Irizarry,et al. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. , 2003, Biostatistics.
[31] Peter A. Jones,et al. Chromatin, cancer and drug therapies. , 2008, Mutation research.
[32] S. Baylin,et al. Frequent epigenetic silencing of the bone morphogenetic protein 2 gene through methylation in gastric carcinomas , 2006, Oncogene.
[33] A. Porwit,et al. MPLW515L mutation in acute megakaryoblastic leukaemia , 2009, Leukemia.
[34] Wei Pan,et al. Incorporating prior knowledge of gene functional groups into regularized discriminant analysis of microarray data , 2007, Bioinform..
[35] Shili Lin,et al. Differential methylation hybridization: profiling DNA methylation with a high-density CpG island microarray. , 2009, Methods in molecular biology.
[36] Terry Speed,et al. Normalization of cDNA microarray data. , 2003, Methods.
[37] Terence P. Speed,et al. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias , 2003, Bioinform..
[38] M. Frommer,et al. CpG islands in vertebrate genomes. , 1987, Journal of molecular biology.
[39] A. Feinberg,et al. Genome-wide methylation analysis of human colon cancer reveals similar hypo- and hypermethylation at conserved tissue-specific CpG island shores , 2008, Nature Genetics.
[40] Alessandra Marini,et al. Role of erythropoietin receptor expression in malignant melanoma. , 2010, The Journal of investigative dermatology.
[41] D. R. Goldstein,et al. Science and Statistics: A Festschrift for Terry Speed , 2003 .