Gene and genome duplication.

Genomic sequencing projects have revealed the productivity of processes duplicating genes or entire chromosome segments. Substantial proportions of the yeast, Arabidopsis and human gene complements are made up of duplicates. This has prompted much interest in the processes of duplication, functional divergence and loss of genes, has renewed the debate on whether an early vertebrate genome was tetraploid, and has inspired mathematical models and algorithms in computational biology.

[1]  K. H. Wolfe Yesterday's polyploids and the mystery of diploidization , 2001, Nature Reviews Genetics.

[2]  Timothy B. Stockwell,et al.  The Sequence of the Human Genome , 2001, Science.

[3]  P. Holland,et al.  Gene duplication: past, present and future. , 1999, Seminars in cell & developmental biology.

[4]  J. Boore The duplication/random loss model for gene rearrangement exemplified by mitochondrial genomes of deu , 2000 .

[5]  M. Delseny,et al.  Extensive Duplication and Reshuffling in the Arabidopsis Genome , 2000, Plant Cell.

[6]  B. Gaut,et al.  Maize as a model for the evolution of plant nuclear genomes. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[7]  M. Lynch,et al.  The evolutionary fate and consequences of duplicate genes. , 2000, Science.

[8]  A. Force,et al.  The probability of duplicate gene preservation by subfunctionalization. , 2000, Genetics.

[9]  David Sankoff,et al.  Genome rearrangement with gene families , 1999, Bioinform..

[10]  Z. Gu,et al.  Evolutionary analyses of the human genome , 2001, Nature.

[11]  J. Eisen Horizontal gene transfer among microbial genomes: new insights from complete genome analysis. , 2000, Current opinion in genetics & development.

[12]  Dannie Durand,et al.  Notung: dating gene duplications using gene family trees , 2000, RECOMB '00.

[13]  A. Wagner,et al.  The role of population size, pleiotropy and fitness effects of mutations in the evolution of overlapping gene functions. , 2000, Genetics.

[14]  Eugen C. Buehler,et al.  Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana , 1999, Nature.

[15]  G. Yeoh,et al.  The effect of glucagon on DNA synthesis in rat spleen and bone marrow , 1972, FEBS letters.

[16]  Lee Altenberg,et al.  Genome Growth and the Evolution of the Genotype-Phenotype Map , 1995, Evolution and Biocomputation.

[17]  K. H. Wolfe,et al.  Molecular evidence for an ancient duplication of the entire yeast genome , 1997, Nature.

[18]  D. Grant,et al.  Genome organization in dicots: genome duplication in Arabidopsis and synteny between soybean and Arabidopsis. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[19]  D. G. Brown,et al.  The origins of genomic duplications in Arabidopsis. , 2000, Science.

[20]  N. El-Mabrouk Recovery of Ancestral Tetraploids , 2000 .

[21]  K. H. Wolfe,et al.  Eukaryote genome duplication - where's the evidence? , 1998, Current opinion in genetics & development.

[22]  A. Force,et al.  Preservation of duplicate genes by complementary, degenerative mutations. , 1999, Genetics.

[23]  E. Eichler,et al.  The Pathological Consequences and Evolutionary Implications of Recent Human Genomic Duplications , 2000 .

[24]  William C. Nierman,et al.  Lin, X. et al. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Nature 402, 761-768 , 1999 .

[25]  G Achaz,et al.  Analysis of intrachromosomal duplications in yeast Saccharomyces cerevisiae: a possible model for their origin. , 2000, Molecular biology and evolution.

[26]  S. Khoo,et al.  A microsatellite linkage map of rainbow trout (Oncorhynchus mykiss) characterized by large sex-specific differences in recombination rates. , 2000, Genetics.

[27]  A. Martín,et al.  Is tetralogy true? Lack of support for the "one-to-four rule". , 2001, Molecular biology and evolution.

[28]  T J Gibson,et al.  Evidence in favour of ancient octaploidy in the vertebrate genome. , 2000, Biochemical Society transactions.

[29]  B. Dujon,et al.  Genomic Exploration of the Hemiascomycetous Yeasts: 18. Comparative analysis of chromosome maps and synteny with Saccharomyces cerevisiae , 2000, FEBS letters.

[30]  D. Mccormick Sequence the Human Genome , 1986, Bio/Technology.

[31]  Kenneth H. Wolfe,et al.  High Frequency of Inversions During Eukaryote Gene Order Evolution , 2000 .

[32]  J. V. Moran,et al.  Initial sequencing and analysis of the human genome. , 2001, Nature.

[33]  X. Gu,et al.  Evolutionary Patterns of Gene Families Generated in the Early Stage of Vertebrates , 2001, Journal of Molecular Evolution.

[34]  D. Sankoff,et al.  Duplication, Rearrangement, and Reconciliation , 2000 .

[35]  The Arabidopsis Genome Initiative Analysis of the genome sequence of the flowering plant Arabidopsis thaliana , 2000, Nature.

[36]  B. Gaut,et al.  DNA sequence evidence for the segmental allotetraploid origin of maize. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[37]  M. Cotton,et al.  Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana , 1999, Nature.

[38]  C. Elsik,et al.  Comparative Genomics of Plant Chromosomes , 2000, Plant Cell.

[39]  B. Gaut Sawkins, Maize as a model for evolution of plant nuclear genomes , 2000 .

[40]  Jerzy Tiuryn,et al.  A Formal Model of Genomic Dna Multiplication and Amplification , 2000 .

[41]  R. Page,et al.  Genetree: A Tool for Exploring Gene Family Evolution , 2000 .

[42]  X. Gu A Simple Evolutionary Model for Genome Phylogeny Based on Gene Content , 2000 .

[43]  S. Tanksley,et al.  Comparing sequenced segments of the tomato and Arabidopsis genomes: large-scale duplication followed by selective gene loss creates a network of synteny. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[44]  A. Hughes,et al.  Ancient genome duplications did not structure the human Hox-bearing chromosomes. , 2001, Genome research.

[45]  A. Hughes,et al.  Gene duplication and the structure of eukaryotic genomes. , 2001, Genome research.

[46]  Dannie Durand,et al.  NOTUNG: A Program for Dating Gene Duplications and Optimizing Gene Family Trees , 2000, J. Comput. Biol..

[47]  Austin L. Hughes,et al.  Adaptive Evolution of Genes and Genomes , 2000 .

[48]  Rick Durrett,et al.  Genome rearrangement , 2022 .

[49]  B. Gaut,et al.  A Survey of the Molecular Evolutionary Dynamics of Twenty-Five Multigene Families from Four Grass Taxa , 2001, Journal of Molecular Evolution.