Response of fluxome and metabolome to temperature-induced recombinant protein synthesis in Escherichia coli.

The response of the central carbon metabolism of Escherichia coli to temperature-induced recombinant production of human fibroblast growth factor was studied on the level of metabolic fluxes and intracellular metabolite levels. During production, E. coli TG1:plambdaFGFB, carrying a plasmid encoded gene for the recombinant product, revealed stress related characteristics such as decreased growth rate and biomass yield and enhanced by-product excretion (acetate, pyruvate, lactate). With the onset of production, the adenylate energy charge dropped from 0.85 to 0.60, indicating the occurrence of a severe energy limitation. This triggered an increase of the glycolytic flux which, however, was not sufficient to compensate for the increased ATP demand. The activation of the glycolytic flux was also indicated by the readjustment of glycolytic pool sizes leading to an increased driving force for the reaction catalyzed by phosphofructokinase. Moreover, fluxes through the TCA cycle, into the pentose phosphate pathway and into anabolic pathways decreased significantly. The strong increase of flux into overflow pathways, especially towards acetate was most likely caused by a flux redirection from pyruvate dehydrogenase to pyruvate oxidase. The glyoxylate shunt, not active during growth, was the dominating anaplerotic pathway during production. Together with pyruvate oxidase and acetyl CoA synthase this pathway could function as a metabolic by-pass to overcome the limitation in the junction between glycolysis and TCA cycle and partly recycle the acetate formed back into the metabolism.

[1]  Christoph Wittmann,et al.  Metabolic network analysis of lysine producing Corynebacterium glutamicum at a miniaturized scale , 2004, Biotechnology and bioengineering.

[2]  Christoph Wittmann,et al.  Amplified Expression of Fructose 1,6-Bisphosphatase in Corynebacterium glutamicum Increases In Vivo Flux through the Pentose Phosphate Pathway and Lysine Production on Different Carbon Sources , 2005, Applied and Environmental Microbiology.

[3]  U. Rinas,et al.  Comparison of temperature- and isopropyl-β-d-thiogalacto-pyranoside-induced synthesis of basic fibroblast growth factor in high-cell-density cultures of recombinant Escherichia coli , 1995 .

[4]  Hans Ulrich Bergmeyer,et al.  Methods of Enzymatic Analysis , 2019 .

[5]  Volker F. Wendisch,et al.  Global gene expression analysis of glucose overflow metabolism in Escherichia coli and reduction of aerobic acetate formation , 2007, Applied Microbiology and Biotechnology.

[6]  Frank Hoffmann,et al.  Stress induced by recombinant protein production in Escherichia coli. , 2004, Advances in biochemical engineering/biotechnology.

[7]  J. Guest,et al.  Pyruvate oxidase contributes to the aerobic growth efficiency of Escherichia coli. , 2001, Microbiology.

[8]  U. Rinas,et al.  Plasmid amplification in Escherichia coli after temperature upshift is impaired by induction of recombinant protein synthesis , 2001, Biotechnology Letters.

[9]  P. Postma,et al.  Reducing the glucose uptake rate in Escherichia coli affects growth rate but not protein production. , 2005, Biotechnology and bioengineering.

[10]  Pei Yee Ho,et al.  Effect of lpdA gene knockout on the metabolism in Escherichia coli based on enzyme activities, intracellular metabolite concentrations and metabolic flux analysis by 13C-labeling experiments. , 2006, Journal of biotechnology.

[11]  F. Neidhardt,et al.  Growth of the bacterial cell , 1983 .

[12]  Francisco Bolívar,et al.  Replacement of the glucose phosphotransferase transport system by galactose permease reduces acetate accumulation and improves process performance of Escherichia coli for recombinant protein production without impairment of growth rate. , 2006, Metabolic engineering.

[13]  Peter Neubauer,et al.  Transient increase of ATP as a response to temperature up-shift in Escherichia coli , 2005, Microbial cell factories.

[14]  Christoph Wittmann,et al.  Genealogy Profiling through Strain Improvement by Using Metabolic Network Analysis: Metabolic Flux Genealogy of Several Generations of Lysine-Producing Corynebacteria , 2002, Applied and Environmental Microbiology.

[15]  H. P. Sørensen,et al.  Advanced genetic strategies for recombinant protein expression in Escherichia coli. , 2005, Journal of biotechnology.

[16]  Mansi El-Mansi,et al.  Control of carbon flux through enzymes of central and intermediary metabolism during growth of Escherichia coli on acetate. , 2006, Current opinion in microbiology.

[17]  P. Moreau Diversion of the Metabolic Flux from Pyruvate Dehydrogenase to Pyruvate Oxidase Decreases Oxidative Stress during Glucose Metabolism in Nongrowing Escherichia coli Cells Incubated under Aerobic, Phosphate Starvation Conditions , 2004, Journal of bacteriology.

[18]  J. Keasling,et al.  Stoichiometric model of Escherichia coli metabolism: incorporation of growth-rate dependent biomass composition and mechanistic energy requirements. , 1997, Biotechnology and bioengineering.

[19]  F. Schneider,et al.  Kinetik der Glucosephosphat-Isomerase (EC 5.3.1.9) aus Hefe in vitro und ihre Anwendung auf Flußberechnungen durch die Gärungskette der anaeroben Hefezelle , 1970 .

[20]  Christoph Wittmann,et al.  Metabolic Fluxes in Corynebacterium glutamicum during Lysine Production with Sucrose as Carbon Source , 2004, Applied and Environmental Microbiology.

[21]  P. Balbás Understanding the art of producing protein and nonprotein molecules in Escherichia coli , 2001, Molecular biotechnology.

[22]  Alan J Wolfe,et al.  Glucose metabolism at high density growth of E. coli B and E. coli K: differences in metabolic pathways are responsible for efficient glucose utilization in E. coli B as determined by microarrays and Northern blot analyses. , 2005, Biotechnology and bioengineering.

[23]  G. Węgrzyn,et al.  Stress responses and replication of plasmids in bacterial cells , 2002, Microbial cell factories.

[24]  U. Sauer,et al.  Metabolic flux profiling of Escherichia coli mutants in central carbon metabolism using GC-MS. , 2003, European journal of biochemistry.

[25]  U. Rinas,et al.  Simple fed-batch technique for high cell density cultivation of Escherichia coli. , 1995, Journal of biotechnology.

[26]  J. Hofmeyr,et al.  Regulating the cellular economy of supply and demand , 2000, FEBS letters.

[27]  D. E. Atkinson The energy charge of the adenylate pool as a regulatory parameter. Interaction with feedback modifiers. , 1968, Biochemistry.

[28]  T. Ryll,et al.  Improved ion-pair high-performance liquid chromatographic method for the quantification of a wide variety of nucleotides and sugar-nucleotides in animal cells. , 1991, Journal of chromatography.

[29]  E. Hofmann,et al.  [10] Phosphofructokinase from yeast , 1982 .

[30]  Eriola Betiku,et al.  Inclusion body anatomy and functioning of chaperone-mediated in vivo inclusion body disassembly during high-level recombinant protein production in Escherichia coli. , 2007, Journal of biotechnology.

[31]  H. Westerhoff,et al.  The Glycolytic Flux in Escherichia coli Is Controlled by the Demand for ATP , 2002, Journal of bacteriology.

[32]  Frank Hoffmann,et al.  Metabolic adaptation of Escherichia coli during temperature-induced recombinant protein production: 2. Redirection of metabolic fluxes. , 2002, Biotechnology and bioengineering.

[33]  G. Winter,et al.  Improved oligonucleotide site-directed mutagenesis using M13 vectors. , 1985, Nucleic acids research.

[34]  Christoph Wittmann,et al.  Comparative Metabolic Flux Analysis of Lysine-Producing Corynebacterium glutamicum Cultured on Glucose or Fructose , 2004, Applied and Environmental Microbiology.

[35]  Hyung Joon Cha,et al.  Down‐regulation of acetate pathway through antisense strategy in Escherichia coli: Improved foreign protein production , 2003, Biotechnology and bioengineering.

[36]  Christoph Wittmann,et al.  Fluxome analysis using GC-MS , 2007, Microbial cell factories.

[37]  M. Araúzo-Bravo,et al.  Metabolic flux analysis for a ppc mutant Escherichia coli based on 13C-labelling experiments together with enzyme activity assays and intracellular metabolite measurements. , 2004, FEMS microbiology letters.

[38]  H. Mori,et al.  Global metabolic response of Escherichia coli to gnd or zwf gene-knockout, based on 13C-labeling experiments and the measurement of enzyme activities , 2004, Applied Microbiology and Biotechnology.