Structure of the far-red light utilizing photosystem I of Acaryochloris marina

[1]  T. Mielke,et al.  Current limits of structural biology: The transient interaction between cytochrome c6 and photosystem I , 2020, Current research in structural biology.

[2]  Jimin Wang,et al.  Opportunities and challenges for assigning cofactors in cryo-EM density maps of chlorophyll-containing proteins , 2020, Communications Biology.

[3]  N. Miyazaki,et al.  Structural basis for assembly and function of a diatom photosystem I-light-harvesting supercomplex , 2020, Nature Communications.

[4]  A. Rutherford,et al.  The primary donor of far-red Photosystem II: ChlD1 or PD2? , 2020, bioRxiv.

[5]  D. Bryant,et al.  Evidence that Chlorophyll f Functions Solely as an Antenna Pigment in Far-Red-Light Photosystem I from Fischerella thermalis PCC 7521. , 2020, Biochimica et biophysica acta. Bioenergetics.

[6]  P. Fromme,et al.  The structure of Photosystem I acclimated to far-red light illuminates an ecologically important acclimation process in photosynthesis , 2020, Science Advances.

[7]  N. Miyazaki,et al.  Structural basis for the adaptation and function of chlorophyll f in photosystem I , 2020, Nature Communications.

[8]  M. Ikeuchi,et al.  Structure of a cyanobacterial photosystem I tetramer revealed by cryo-electron microscopy , 2019, Nature Communications.

[9]  W. Chiu,et al.  Measurement of Atom Resolvability in CryoEM Maps with Q-scores , 2019, bioRxiv.

[10]  Paul D Adams,et al.  cryo_fit: Democratization of Flexible Fitting for Cryo-EM. , 2019, Journal of structural biology.

[11]  N. Miyazaki,et al.  Structure of the green algal photosystem I supercomplex with a decameric light-harvesting complex I , 2019, Nature Plants.

[12]  T. Ishikawa,et al.  A new cryo-EM system for single particle analysis. , 2019, Journal of structural biology.

[13]  Jian-Ren Shen,et al.  Structure of a green algal photosystem I in complex with a large number of light-harvesting complex I subunits , 2019, Nature Plants.

[14]  D. Bryant,et al.  Energy transfer from chlorophyll f to the trapping center in naturally occurring and engineered Photosystem I complexes , 2019, Photosynthesis Research.

[15]  Wah Chiu,et al.  Assessment of structural features in Cryo-EM density maps using SSE and side chain Z-scores. , 2018, Journal of structural biology.

[16]  N. Nelson,et al.  Structure and function of wild-type and subunit-depleted photosystem I in Synechocystis. , 2018, Biochimica et biophysica acta. Bioenergetics.

[17]  T. Friedrich,et al.  Photosynthesis supported by a chlorophyll f-dependent, entropy-driven uphill energy transfer in Halomicronema hongdechloris cells adapted to far-red light , 2018, Photosynthesis Research.

[18]  S. Santabarbara,et al.  Photochemistry beyond the red limit in chlorophyll f–containing photosystems , 2018, Science.

[19]  Garib N Murshudov,et al.  Current approaches for the fitting and refinement of atomic models into cryo-EM maps using CCP-EM , 2018, Acta crystallographica. Section D, Structural biology.

[20]  K. Yonekura,et al.  Hexameric and pentameric complexes of the ExbBD energizer in the Ton system , 2018, eLife.

[21]  Jian-Ren Shen,et al.  Unique organization of photosystem I–light-harvesting supercomplex revealed by cryo-EM from a red alga , 2018, Proceedings of the National Academy of Sciences.

[22]  Randy J. Read,et al.  Real-space refinement in PHENIX for cryo-EM and crystallography , 2018, bioRxiv.

[23]  R. Fromme,et al.  Structure of a symmetric photosynthetic reaction center–photosystem , 2017, Science.

[24]  D. Agard,et al.  MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy , 2017, Nature Methods.

[25]  Gabriel F. Dorlhiac,et al.  Femtosecond Visible Transient Absorption Spectroscopy of Chlorophyll f-Containing Photosystem I , 2017, Biophysical journal.

[26]  Ben M. Webb,et al.  Comparative Protein Structure Modeling Using MODELLER , 2016, Current protocols in bioinformatics.

[27]  N. Grigorieff,et al.  CTFFIND4: Fast and accurate defocus estimation from electron micrographs , 2015, bioRxiv.

[28]  N. Nelson,et al.  The structure of plant photosystem I super-complex at 2.8 Å resolution , 2015, eLife.

[29]  N. Nelson,et al.  Structure and energy transfer in photosystems of oxygenic photosynthesis. , 2015, Annual review of biochemistry.

[30]  Jian-Ren Shen,et al.  Structural basis for energy transfer pathways in the plant PSI-LHCI supercomplex , 2015, Science.

[31]  D. Bryant,et al.  Extensive remodeling of a cyanobacterial photosynthetic apparatus in far-red light , 2014, Science.

[32]  H. Miyashita,et al.  Discovery of Chlorophyll d in Acaryochloris marina and Chlorophyll f in a Unicellular Cyanobacterium, Strain KC1, Isolated from Lake Biwa , 2014 .

[33]  M. Kawachi,et al.  Physicochemical properties of divinyl chlorophylls α,α' and divinyl pheophytin α compared with those of monovinyl derivatives , 2014 .

[34]  H. Miyashita,et al.  Physicochemical Properties of Chlorophylls in Oxygenic Photosynthesis — Succession of Co-Factors from Anoxygenic to Oxygenic Photosynthesis , 2013 .

[35]  Robert Eugene Blankenship,et al.  Extinction coefficient for red-shifted chlorophylls: chlorophyll d and chlorophyll f. , 2012, Biochimica et biophysica acta.

[36]  Jian-Ren Shen,et al.  Cationic state distribution over the chlorophyll d-containing P(D1)/P(D2) pair in photosystem II. , 2012, Biochimica et biophysica acta.

[37]  T. Sugimura,et al.  5'-monohydroxyphylloquinone is the dominant naphthoquinone of PSI in the green alga Chlamydomonas reinhardtii. , 2012, Plant & cell physiology.

[38]  Hiroshi Ishikita,et al.  Cationic state distribution over the P700 chlorophyll pair in photosystem I. , 2011, Biophysical journal.

[39]  Keisuke Kawakami,et al.  Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9 Å , 2011, Nature.

[40]  H. Scheer,et al.  A Red-Shifted Chlorophyll , 2010, Science.

[41]  P. Emsley,et al.  Features and development of Coot , 2010, Acta crystallographica. Section D, Biological crystallography.

[42]  R. Hiller,et al.  X‐ray structures of the peridinin–chlorophyll‐protein reconstituted with different chlorophylls , 2010, FEBS letters.

[43]  T. Renger,et al.  Structure-based calculations of optical spectra of photosystem I suggest an asymmetric light-harvesting process. , 2010, Journal of the American Chemical Society.

[44]  Y. Kashino,et al.  Comparative analysis of light response curves of Ramalina yasudae and freshly isolated Trebouxia sp. revealed the presence of intrinsic protection mechanisms independent of upper cortex for the photosynthetic system of algal symbionts in lichen , 2010 .

[45]  Paul D Adams,et al.  Electronic Reprint Biological Crystallography Electronic Ligand Builder and Optimization Workbench (elbow ): a Tool for Ligand Coordinate and Restraint Generation Biological Crystallography Electronic Ligand Builder and Optimization Workbench (elbow): a Tool for Ligand Coordinate and Restraint Gener , 2022 .

[46]  Wah Chiu,et al.  JADAS: a customizable automated data acquisition system and its application to ice-embedded single particles. , 2009, Journal of structural biology.

[47]  H. Miyashita,et al.  Unique photosystems in Acaryochloris marina , 2008, Photosynthesis Research.

[48]  J. Barber,et al.  Spectroscopic studies of the chlorophyll d containing photosystem I from the cyanobacterium, Acaryochloris marina. , 2008, Biochimica et biophysica acta.

[49]  J. Barber,et al.  The Thermodynamics and Kinetics of Electron Transfer between Cytochrome b6f and Photosystem I in the Chlorophyll d-dominated Cyanobacterium, Acaryochloris marina* , 2008, Journal of Biological Chemistry.

[50]  M. Mimuro,et al.  Characterization of Highly Purified Photosystem I Complexes from the Chlorophyll d-dominated Cyanobacterium Acaryochloris marina MBIC 11017* , 2008, Journal of Biological Chemistry.

[51]  Lawrence E. Page,et al.  Niche adaptation and genome expansion in the chlorophyll d-producing cyanobacterium Acaryochloris marina , 2008, Proceedings of the National Academy of Sciences.

[52]  S. Takaichi,et al.  Unidirectional Electron Transfer in Chlorophyll d-Containing Photosystem I Reaction Center Complex of Acaryochloris marina , 2008 .

[53]  Ben M. Webb,et al.  Comparative Protein Structure Modeling Using MODELLER , 2007, Current protocols in protein science.

[54]  Tatsuya Uzumaki,et al.  Function of chlorophyll d in reaction centers of photosystems I and II of the oxygenic photosynthesis of Acaryochloris marina. , 2007, Biochemistry.

[55]  G. Hastings,et al.  Vibrational mode frequency calculations of chlorophyll-d for assessing (P740+-P740) FTIR difference spectra obtained using photosystem I particles from Acaryochloris marina , 2007, Photosynthesis Research.

[56]  T. Tomo,et al.  Proton ENDOR study of the primary donor P740+, a special pair of chlorophyll d in photosystem I reaction center of Acaryochloris marina , 2005 .

[57]  Conrad C. Huang,et al.  UCSF Chimera—A visualization system for exploratory research and analysis , 2004, J. Comput. Chem..

[58]  G. Shen,et al.  Evidence for asymmetric electron transfer in cyanobacterial photosystem I: analysis of a methionine-to-leucine mutation of the ligand to the primary electron acceptor A0. , 2004, Biochemistry.

[59]  Su Lin,et al.  Bidirectional electron transfer in photosystem I: accumulation of A0- in A-side or B-side mutants of the axial ligand to chlorophyll A0. , 2004, Biochemistry.

[60]  H. Trissl.  Long-wavelength absorbing antenna pigments and heterogeneous absorption bands concentrate excitons and increase absorption cross section , 1993, Photosynthesis Research.

[61]  M. Mimuro,et al.  Quest for minor but key chlorophyll molecules in photosynthetic reaction centers – unusual pigment composition in the reaction centers of the chlorophyll d-dominated cyanobacterium Acaryochloris marina , 2004, Photosynthesis Research.

[62]  S. Kudoh,et al.  Concerted response of xanthophyll‐cycle pigments in a marine diatom, Chaetoceros gracilis, to shifts in light condition , 2003 .

[63]  B. Zybailov,et al.  Electron Transfer in Cyanobacterial Photosystem I , 2003, Journal of Biological Chemistry.

[64]  B. Zybailov,et al.  Electron Transfer in Cyanobacterial Photosystem I I. PHYSIOLOGICAL AND SPECTROSCOPIC CHARACTERIZATION OF SITE-DIRECTED MUTANTS IN A PUTATIVE ELECTRON TRANSFER PATHWAY FROM A 0 THROUGH A 1 TO F X , 2003 .

[65]  S. Itoh,et al.  Energy equilibration and primary charge separation in chlorophyll d‐based photosystem I reaction center isolated from Acaryochloris marina , 2002, FEBS letters.

[66]  W. Delano.  The PyMOL Molecular Graphics System , 2002 .

[67]  G. Hastings.  Time-Resolved Step-Scan Fourier Transform Infrared and Visible Absorption Difference Spectroscopy for the Study of Photosystem I , 2001 .

[68]  Petra Fromme,et al.  Three-dimensional structure of cyanobacterial photosystem I at 2.5 Å resolution , 2001, Nature.

[69]  Y. Kashino,et al.  An improved sodium dodecyl sulfate‐polyacrylamide gel electrophoresis system for the analysis of membrane protein complexes , 2001, Electrophoresis.

[70]  P. Joliot,et al.  Evidence for two active branches for electron transfer in photosystem I , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[71]  P. Fromme,et al.  Orientation and Electronic Structure of the Primary Donor Radical Cation in Photosystem I: A Single Crystals EPR and ENDOR Study , 2001 .

[72]  J. Breton,et al.  FTIR study of the primary electron donor of photosystem I (P700) revealing delocalization of the charge in P700(+) and localization of the triplet character in (3)P700. , 1999, Biochemistry.

[73]  Q. Hu,et al.  A photosystem I reaction center driven by chlorophyll d in oxygenic photosynthesis. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[74]  W. Lubitz,et al.  Site-directed mutations affecting the spectroscopic characteristics and midpoint potential of the primary donor in photosystem I. , 1996, Biochemistry.

[75]  Hideaki Miyashita,et al.  Chlorophyll d as a major pigment , 1996, Nature.

[76]  M. Evans,et al.  Modulation analysis of the electron spin echo signals of in vivo oxidised primary donor 14N chlorophyll centres in bacterial, P870 and P960, and plant Photosystem I, P700, reaction centres , 1993 .

[77]  R. J. Porra,et al.  Determination of accurate extinction coefficients and simultaneous equations for assaying chlorophylls a and b extracted with four different solvents: verification of the concentration of chlorophyll standards by atomic absorption spectroscopy , 1989 .

[78]  T. Matsunaga,et al.  Chlorophyll a′/P-700 and pheophytin a/P-680 stoichiometries in higher plants and cyanobacteria determined by HPLC analysis , 1988 .