Comparative metagenomics reveals different hydrocarbon degradative abilities from enriched oil-drilling waste.
暂无分享,去创建一个
Jorge S. Oliveira | Lucymara F. Agnez-Lima | M. Vainstein | C. Thompson | F. Bento | R. C. Silva-Portela | L. F. Agnez-Lima | L. Passaglia | Marilene H. Vainstein | M. Peralba | Amanda P. Napp | José Evandro S. Pereira | Rita C.B. Silva-Portela | Maria C.R. Peralba | Fátima M. Bento | Luciane M.P. Passaglia | Claudia E. Thompson | A. Napp | J. E. S. Pereira
[1] N. Youssef,et al. Comparison of methods to detect biosurfactant production by diverse microorganisms. , 2004, Journal of microbiological methods.
[2] K. Timmis,et al. Generalist hydrocarbon-degrading bacterial communities in the oil-polluted water column of the North Sea , 2014, Microbial biotechnology.
[3] H. Atagana,et al. Isolation and characterisation of crude oil sludge degrading bacteria , 2016, SpringerPlus.
[4] Ana Tereza Ribeiro de Vasconcelos,et al. BioSurfDB: knowledge and algorithms to support biosurfactants and biodegradation studies , 2015, Database J. Biol. Databases Curation.
[5] F. Camargo,et al. Bioprospection and selection of bacteria isolated from environments contaminated with petrochemical residues for application in bioremediation , 2011, World Journal of Microbiology and Biotechnology.
[6] Z. Shao,et al. Enzymes and genes involved in aerobic alkane degradation , 2013, Front. Microbiol..
[7] D. Cooper,et al. Surface-Active Agents from Two Bacillus Species , 1987, Applied and environmental microbiology.
[8] T. Hazen,et al. Hydrocarbon-Degrading Bacteria and the Bacterial Community Response in Gulf of Mexico Beach Sands Impacted by the Deepwater Horizon Oil Spill , 2011, Applied and Environmental Microbiology.
[9] I. Banat,et al. Applications of biological surface active compounds in remediation technologies. , 2010, Advances in experimental medicine and biology.
[10] K. Timmis,et al. Genome sequence of the ubiquitous hydrocarbon-degrading marine bacterium Alcanivorax borkumensis , 2006, Nature Biotechnology.
[11] C. A. D. Silva,et al. Optimization of an analytical protocol for the extraction, fractionation and determination of aromatic and aliphatic hydrocarbons in sediments , 2012 .
[12] A. Dell'Anno,et al. Biosurfactant-induced remediation of contaminated marine sediments: Current knowledge and future perspectives. , 2018, Marine environmental research.
[13] N. Fortin,et al. Chemical dispersants enhance the activity of oil- and gas condensate-degrading marine bacteria , 2017, The ISME Journal.
[14] I. Banat,et al. Microbial biosurfactants production, applications and future potential , 2010, Applied Microbiology and Biotechnology.
[15] Surajit Das,et al. Biosurfactant-Based Bioremediation of Toxic Metals , 2014 .
[16] L. G. S. Sobral,et al. Biorremediação de solos contaminados por petróleo: ênfase no uso de biorreatores , 2006 .
[17] Ł. Chrzanowski,et al. Contributions of biosurfactants to natural or induced bioremediation , 2013, Applied Microbiology and Biotechnology.
[18] S. Dhebar,et al. Metagenomics of petroleum muck: revealing microbial diversity and depicting microbial syntrophy , 2014, Archives of Microbiology.
[19] H. Jacquemyn,et al. Biosurfactant production by Pseudomonas strains isolated from floral nectar , 2015, Journal of applied microbiology.
[20] N. Das,et al. Microbial Degradation of Petroleum Hydrocarbon Contaminants: An Overview , 2010, Biotechnology research international.
[21] A. M. Solanas,et al. Bacterial Community Dynamics and Polycyclic Aromatic Hydrocarbon Degradation during Bioremediation of Heavily Creosote-Contaminated Soil , 2005, Applied and Environmental Microbiology.
[22] J. Braddock,et al. A Simple Method for Enumerating Gasoline- and Diesel-Degrading Microorganisms , 1999 .
[23] Swaranjit Singh Cameotra,et al. Environmental Applications of Biosurfactants: Recent Advances , 2011, International journal of molecular sciences.
[24] Abhishek Gupta,et al. Biostimulation and bioaugmentation of native microbial community accelerated bioremediation of oil refinery sludge. , 2018, Bioresource technology.
[25] R. Peixoto,et al. Petroleum-Degrading Enzymes: Bioremediation and New Prospects , 2011, Enzyme research.
[26] G. Fuchs,et al. Isolation and characterization of indigenous thermophilic bacteria active in natural attenuation of bio-hazardous petrochemical pollutants , 2006 .
[27] Abir Al-Tabbaa,et al. Stabilisation/solidification of synthetic petroleum drill cuttings. , 2007, Journal of hazardous materials.
[28] Alicja Szulc,et al. Biodegradation and surfactant-mediated biodegradation of diesel fuel by 218 microbial consortia are not correlated to cell surface hydrophobicity , 2009, Applied Microbiology and Biotechnology.
[29] Juan Peng,et al. Isolation and characterization of a novel hydrocarbon-degrading bacterium Achromobacter sp. HZ01 from the crude oil-contaminated seawater at the Daya Bay, southern China. , 2014, Marine pollution bulletin.
[30] Krishna K. Kadali,et al. Mineralisation of Weathered Crude Oil by a Hydrocarbonoclastic Consortia in Marine Mesocosms , 2012, Water, Air, & Soil Pollution.
[31] A. Krasowska,et al. Identification and characterization of biosurfactants produced by the Arctic bacterium Pseudomonas putida BD2. , 2013, Colloids and surfaces. B, Biointerfaces.
[32] E. Chirwa,et al. Pyrene biodegradation enhancement potential of lipopeptide biosurfactant produced by Paenibacillus dendritiformis CN5 strain. , 2017, Journal of hazardous materials.
[33] Ana T. Freitas,et al. Metagenome enrichment approach used for selection of oil-degrading bacteria consortia for drill cutting residue bioremediation. , 2018, Environmental pollution.
[34] J. Heider,et al. Microbial degradation of aromatic compounds — from one strategy to four , 2011, Nature Reviews Microbiology.
[35] W. Röling,et al. Marine microorganisms make a meal of oil , 2006, Nature Reviews Microbiology.
[36] Marius Henkel,et al. High-performance thin-layer chromatography (HPTLC) for the simultaneous quantification of the cyclic lipopeptides Surfactin, Iturin A and Fengycin in culture samples of Bacillus species. , 2017, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.
[37] A. Kapley,et al. Comparative metagenomics demonstrating different degradative capacity of activated biomass treating hydrocarbon contaminated wastewater. , 2015, Bioresource technology.
[38] Łukasz Chrzanowski,et al. Why do microorganisms produce rhamnolipids? , 2011, World Journal of Microbiology and Biotechnology.
[39] A. Nemr,et al. The monitoring and risk assessment of aliphatic and aromatic hydrocarbons in sediments of the Red Sea, Egypt , 2014 .
[40] Shabnam Murshid,et al. Enhanced biodegradation of hydrocarbons in petroleum tank bottom oil sludge and characterization of biocatalysts and biosurfactants. , 2018, Journal of environmental management.
[41] E. Madsen,et al. Comparative Genomic Analysis and Benzene, Toluene, Ethylbenzene, and o-, m-, and p-Xylene (BTEX) Degradation Pathways of Pseudoxanthomonas spadix BD-a59 , 2012, Applied and Environmental Microbiology.
[42] Petrović Olga,et al. Screening method for detection of hydrocarbon-oxidizing bacteria in oil-contaminated water and soil specimens. , 2008, Journal of microbiological methods.
[43] T. Vogel,et al. Characterization of a soil bacterial consortium capable of degrading diesel fuel , 1999 .
[44] E. C. Souza,et al. Biosurfactant-enhanced hydrocarbon bioremediation: An overview , 2014 .
[45] M. Vainstein,et al. Identification and ultra‐high‐performance liquid chromatography coupled with high‐resolution mass spectrometry characterization of biosurfactants, including a new surfactin, isolated from oil‐contaminated environments , 2018, Microbial biotechnology.
[46] F. Bento,et al. Oily sludge stimulates microbial activity and changes microbial structure in a landfarming soil , 2016 .
[47] Adora M. Alvarez,et al. Introduction , 2018, Theoretical and Experimental Chemistry.
[48] S. K. Kazy,et al. Microbial diversity, community composition and metabolic potential in hydrocarbon contaminated oily sludge: prospects for in situ bioremediation , 2014, Environmental Science and Pollution Research.
[49] Ronald M. Atlas,et al. Handbook of microbiological media , 1993 .
[50] A. Saxena,et al. Identification and analysis of polyaromatic hydrocarbons (PAHs)—biodegrading bacterial strains from refinery soil of India , 2015, Environmental Monitoring and Assessment.
[51] R. Sen,et al. Improved bioavailability and biodegradation of a model polyaromatic hydrocarbon by a biosurfactant producing bacterium of marine origin. , 2008, Chemosphere.
[52] C. Cerniglia,et al. Degradation of Polycyclic Aromatic Hydrocarbons by Fungi , 2010 .
[53] G. Emtiazi,et al. Utilization of petroleum hydrocarbons by Pseudomonas sp. and transformed Escherichia coli , 2005 .
[54] E. Vasileva-Tonkova,et al. Biosurfactant Production by Antarctic Facultative Anaerobe Pantoea sp. During Growth on Hydrocarbons , 2007, Current Microbiology.
[55] V. M. de Oliveira,et al. New Hydrocarbon Degradation Pathways in the Microbial Metagenome from Brazilian Petroleum Reservoirs , 2014, PloS one.
[56] Zdena Palková,et al. Multicellular microorganisms: laboratory versus nature , 2004, EMBO reports.
[57] Krishna K. Kadali,et al. Assessing the hydrocarbon degrading potential of indigenous bacteria isolated from crude oil tank bottom sludge and hydrocarbon-contaminated soil of Azzawiya oil refinery, Libya , 2014, Environmental Science and Pollution Research.
[58] F. Bento,et al. Anthracene biodegradation by Pseudomonas sp. isolated from a petrochemical sludge landfarming site , 2005 .
[59] F. Rojo. Degradation of alkanes by bacteria. , 2009, Environmental microbiology.
[60] M. Afzal,et al. Nutrients Can Enhance the Abundance and Expression of Alkane Hydroxylase CYP153 Gene in the Rhizosphere of Ryegrass Planted in Hydrocarbon-Polluted Soil , 2014, PloS one.
[61] M. Vainstein,et al. Biodegradation potential of oily sludge by pure and mixed bacterial cultures. , 2011, Bioresource technology.
[62] Guangming Zeng,et al. Recent development in the treatment of oily sludge from petroleum industry: a review. , 2013, Journal of hazardous materials.
[63] J. González-Pastor,et al. Functional metagenomics of extreme environments. , 2016, Current opinion in biotechnology.
[64] G. Sezonov,et al. Escherichia coli Physiology in Luria-Bertani Broth , 2007, Journal of bacteriology.
[65] Ana T. Freitas,et al. Biogeographical distribution analysis of hydrocarbon degrading and biosurfactant producing genes suggests that near-equatorial biomes have higher abundance of genes with potential for bioremediation , 2017, BMC Microbiology.
[66] Andreas Wilke,et al. phylogenetic and functional analysis of metagenomes , 2022 .
[67] M. Afzal,et al. Hydrocarbon degradation, plant colonization and gene expression of alkane degradation genes by endophytic Enterobacter ludwigii strains. , 2011, Environmental pollution.
[68] Robert G. Beiko,et al. Identifying biologically relevant differences between metagenomic communities , 2010, Bioinform..
[69] S. Kumari,et al. Improved polycyclic aromatic hydrocarbon degradation in a crude oil by individual and a consortium of bacteria. , 2018, Bioresource technology.