Machine learning for automatic construction of pediatric abdominal phantoms for radiation dose reconstruction

The advent of Machine Learning (ML) is proving extremely beneficial in many healthcare applications. In pediatric oncology, retrospective studies that investigate the relationship between treatment and late adverse effects still rely on simple heuristics. To capture the effects of radiation treatment, treatment plans are typically simulated on virtual surrogates of patient anatomy called phantoms. Currently, phantoms are built to represent categories of patients based on reasonable yet simple criteria. This often results in phantoms that are too generic to accurately represent individual anatomies. We present a novel approach that combines imaging data and ML to build individualized phantoms automatically. We design a pipeline that, given features of patients treated in the pre-3D planning era when only 2D radiographs were available, as well as a database of 3D Computed Tomography (CT) imaging with organ segmentations, uses ML to predict how to assemble a patient-specific phantom. Using 60 abdominal CTs of pediatric patients between 2 to 6 years of age, we find that our approach delivers significantly more representative phantoms compared to using current phantom building criteria, in terms of shape and location of two considered organs (liver and spleen), and shape of the abdomen. Furthermore, as interpretability is often central to trust ML models in medical contexts, among other ML algorithms we consider the Gene-pool Optimal Mixing Evolutionary Algorithm for Genetic Programming (GP-GOMEA), that learns readable mathematical expression models. We find that the readability of its output does not compromise prediction performance as GP-GOMEA delivered the best performing models.

[1]  Cees Witteveen,et al.  On the feasibility of automatically selecting similar patients in highly individualized radiotherapy dose reconstruction for historic data of pediatric cancer survivors , 2018, Medical physics.

[2]  C. Koning,et al.  Evaluation of late adverse events in long-term wilms' tumor survivors. , 2010, International journal of radiation oncology, biology, physics.

[3]  N Breslow,et al.  Epidemiology of Wilms tumor. , 1993, Medical and pediatric oncology.

[4]  Peter A. N. Bosman,et al.  Scalable genetic programming by gene-pool optimal mixing and input-space entropy-based building-block learning , 2017, GECCO.

[5]  Stephanie Lamart,et al.  Reconstruction of organ dose for external radiotherapy patients in retrospective epidemiologic studies , 2015, Physics in medicine and biology.

[6]  Rebecca M Howell,et al.  Adaptations to a Generalized Radiation Dose Reconstruction Methodology for Use in Epidemiologic Studies: An Update from the MD Anderson Late Effect Group. , 2019, Radiation research.

[7]  R. Tibshirani Regression Shrinkage and Selection via the Lasso , 1996 .

[8]  H. Zaidi,et al.  Computational hybrid anthropometric paediatric phantom library for internal radiation dosimetry. , 2017, Physics in medicine and biology.

[9]  Geraint Rees,et al.  Deep learning to achieve clinically applicable segmentation of head and neck anatomy for radiotherapy , 2018, ArXiv.

[10]  Arun Ross,et al.  Score normalization in multimodal biometric systems , 2005, Pattern Recognit..

[11]  John R. Koza,et al.  Genetic programming as a means for programming computers by natural selection , 1994 .

[12]  Wesley E Bolch,et al.  The UF/NCI family of hybrid computational phantoms representing the current US population of male and female children, adolescents, and adults—application to CT dosimetry , 2014, Physics in medicine and biology.

[13]  J. Valentin Basic anatomical and physiological data for use in radiological protection: reference values , 2002, Annals of the ICRP.

[14]  J Chavaudra,et al.  Individual radiation therapy patient whole-body phantoms for peripheral dose evaluations: method and specific software , 2009, Physics in medicine and biology.

[15]  Peter A. N. Bosman,et al.  Symbolic regression and feature construction with GP-GOMEA applied to radiotherapy dose reconstruction of childhood cancer survivors , 2018, GECCO.

[16]  Leo Breiman,et al.  Random Forests , 2001, Machine Learning.

[17]  Tanja Alderliesten,et al.  Are age and gender suitable matching criteria in organ dose reconstruction using surrogate childhood cancer patients’ CT scans? , 2018, Medical physics.

[18]  Jean Chavaudra,et al.  A review of uncertainties in radiotherapy dose reconstruction and their impacts on dose–response relationships , 2017, Journal of radiological protection : official journal of the Society for Radiological Protection.

[19]  X George Xu,et al.  An exponential growth of computational phantom research in radiation protection, imaging, and radiotherapy: a review of the fifty-year history , 2014, Physics in medicine and biology.

[20]  R. Tibshirani,et al.  Least angle regression , 2004, math/0406456.

[21]  M Durigon,et al.  Organ weight in 684 adult autopsies: new tables for a Caucasoid population. , 2001, Forensic science international.

[22]  Franco Turini,et al.  A Survey of Methods for Explaining Black Box Models , 2018, ACM Comput. Surv..

[23]  John D Boice,et al.  Genetic effects of radiotherapy for childhood cancer: gonadal dose reconstruction. , 2004, International journal of radiation oncology, biology, physics.

[24]  K. Flegal,et al.  Increasing Prevalence of Overweight Among US Adults: The National Health and Nutrition Examination Surveys, 1960 to 1991 , 1994 .

[25]  Riccardo Poli,et al.  A Field Guide to Genetic Programming , 2008 .

[26]  Cees Witteveen,et al.  Improving Model-Based Genetic Programming for Symbolic Regression of Small Expressions , 2019, Evolutionary Computation.