The POLD3 subunit of DNA polymerase δ can promote translesion synthesis independently of DNA polymerase ζ

The replicative DNA polymerase Polδ consists of a catalytic subunit POLD1/p125 and three regulatory subunits POLD2/p50, POLD3/p66 and POLD4/p12. The ortholog of POLD3 in Saccharomyces cerevisiae, Pol32, is required for a significant proportion of spontaneous and UV-induced mutagenesis through its additional role in translesion synthesis (TLS) as a subunit of DNA polymerase ζ. Remarkably, chicken DT40 B lymphocytes deficient in POLD3 are viable and able to replicate undamaged genomic DNA with normal kinetics. Like its counterpart in yeast, POLD3 is required for fully effective TLS, its loss resulting in hypersensitivity to a variety of DNA damaging agents, a diminished ability to maintain replication fork progression after UV irradiation and a significant decrease in abasic site-induced mutagenesis in the immunoglobulin loci. However, these defects appear to be largely independent of Polζ, suggesting that POLD3 makes a significant contribution to TLS independently of Polζ in DT40 cells. Indeed, combining polη, polζ and pold3 mutations results in synthetic lethality. Additionally, we show in vitro that POLD3 promotes extension beyond an abasic by the Polδ holoenzyme suggesting that while POLD3 is not required for normal replication, it may help Polδ to complete abasic site bypass independently of canonical TLS polymerases.

[1]  T. Tahirov,et al.  A novel variant of DNA polymerase ζ, Rev3ΔC, highlights differential regulation of Pol32 as a subunit of polymerase δ versus ζ in Saccharomyces cerevisiae. , 2014, DNA repair.

[2]  George Iliakis,et al.  Break-Induced Replication Repair of Damaged Forks Induces Genomic Duplications in Human Cells , 2014, Science.

[3]  Z. Darżynkiewicz,et al.  The tail that wags the dog: p12, the smallest subunit of DNA polymerase δ, is degraded by ubiquitin ligases in response to DNA damage and during cell cycle progression , 2014, Cell cycle.

[4]  J. Hurwitz,et al.  Reconstitution of recombination-associated DNA synthesis with human proteins , 2013, Nucleic acids research.

[5]  L. Loeb,et al.  DNA polymerase delta in dna replication and genome maintenance , 2012, Environmental and molecular mutagenesis.

[6]  Joseph L. Stodola,et al.  A four-subunit DNA polymerase ζ complex containing Pol δ accessory subunits is essential for PCNA-mediated mutagenesis , 2012, Nucleic acids research.

[7]  Marietta Y. W. T. Lee,et al.  Characterization of Human DNA Polymerase Delta and Its Subassemblies Reconstituted by Expression in the Multibac System , 2012, PloS one.

[8]  Robert E. Johnson,et al.  Pol31 and Pol32 subunits of yeast DNA polymerase δ are also essential subunits of DNA polymerase ζ , 2012, Proceedings of the National Academy of Sciences.

[9]  T. Tahirov,et al.  DNA Polymerase δ and ζ Switch by Sharing Accessory Subunits of DNA Polymerase δ* , 2012, The Journal of Biological Chemistry.

[10]  J. Sale Measurement of diversification in the immunoglobulin light chain gene of DT40 cells. , 2012, Methods in molecular biology.

[11]  Alain Arneodo,et al.  Evidence for Sequential and Increasing Activation of Replication Origins along Replication Timing Gradients in the Human Genome , 2011, PLoS Comput. Biol..

[12]  R. Lill,et al.  Eukaryotic DNA polymerases require an iron-sulfur cluster for the formation of active complexes , 2011, Nature chemical biology.

[13]  K. Hirota,et al.  Human replicative DNA polymerase δ can bypass T‐T (6‐4) ultraviolet photoproducts on template strands , 2010, Genes to cells : devoted to molecular & cellular mechanisms.

[14]  F. Guengerich,et al.  Translesion synthesis across abasic lesions by human B-family and Y-family DNA polymerases α, δ, η, ι, κ, and REV1. , 2010, Journal of molecular biology.

[15]  J. Sale,et al.  Simultaneous Disruption of Two DNA Polymerases, Polη and Polζ, in Avian DT40 Cells Unmasks the Role of Polη in Cellular Response to Various DNA Lesions , 2010, PLoS genetics.

[16]  M. Yoshimura,et al.  DNA polymerases ν and θ are required for efficient immunoglobulin V gene diversification in chicken , 2010, The Journal of cell biology.

[17]  Z. Livneh,et al.  Multiple two-polymerase mechanisms in mammalian translesion DNA synthesis , 2010, Cell cycle.

[18]  N. de Wind,et al.  Mammalian polymerase zeta is essential for post-replication repair of UV-induced DNA lesions. , 2009, DNA repair.

[19]  L. Loeb,et al.  High fidelity and lesion bypass capability of human DNA polymerase delta. , 2009, Biochimie.

[20]  Robert E. Johnson,et al.  Yeast Rev1 protein promotes complex formation of DNA polymerase ζ with Pol32 subunit of DNA polymerase δ , 2009, Proceedings of the National Academy of Sciences.

[21]  T. Hirabayashi,et al.  DNA Polymerase δ Is Required for Early Mammalian Embryogenesis , 2009, PloS one.

[22]  J. Sale,et al.  Genetic Evidence for Single-Strand Lesions Initiating Nbs1-Dependent Homologous Recombination in Diversification of Ig V in Chicken B Lymphocytes , 2009, PLoS genetics.

[23]  Marietta Y. W. T. Lee,et al.  DNA damage alters DNA polymerase δ to a form that exhibits increased discrimination against modified template bases and mismatched primers , 2008, Nucleic acids research.

[24]  H. Arakawa,et al.  The 9-1-1 DNA Clamp Is Required for Immunoglobulin Gene Conversion , 2008, Molecular and Cellular Biology.

[25]  J. Sale,et al.  PCNA ubiquitination and REV1 define temporally distinct mechanisms for controlling translesion synthesis in the avian cell line DT40. , 2008, Molecular cell.

[26]  T. Kunkel,et al.  Division of labor at the eukaryotic replication fork. , 2008, Molecular cell.

[27]  U. Camenisch,et al.  XPA gene, its product and biological roles. , 2008, Advances in experimental medicine and biology.

[28]  J. Haber,et al.  Break-induced replication and telomerase-independent telomere maintenance require Pol32 , 2007, Nature.

[29]  F. Guengerich,et al.  Translesion Synthesis across O6-Alkylguanine DNA Adducts by Recombinant Human DNA Polymerases* , 2006, Journal of Biological Chemistry.

[30]  S. Jentsch,et al.  A Role for PCNA Ubiquitination in Immunoglobulin Hypermutation , 2006, PLoS biology.

[31]  Samuel H. Wilson,et al.  Vertebrate POLQ and POLbeta cooperate in base excision repair of oxidative DNA damage. , 2006, Molecular cell.

[32]  Pauline E. Chugh,et al.  Modification of Human Immunodeficiency Virus Type 1 Reverse Transcriptase to Target Cells with Elevated Cellular dNTP Concentrations* , 2006, Journal of Biological Chemistry.

[33]  J. Sale,et al.  The catalytic activity of REV1 is employed during immunoglobulin gene diversification in DT40. , 2006, Molecular immunology.

[34]  N. de Wind,et al.  Strand-biased defect in C/G transversions in hypermutating immunoglobulin genes in Rev1-deficient mice , 2006, The Journal of experimental medicine.

[35]  J. Stavnezer Faculty Opinions recommendation of Uracil DNA glycosylase disruption blocks Ig gene conversion and induces transition mutations. , 2006 .

[36]  C. Friedberg Errol,et al.  DNA Repair and Mutagenesis, Second Edition , 2006 .

[37]  E. Friedberg,et al.  DNA Repair and Mutagenesis , 2006 .

[38]  S. Jinks-Robertson,et al.  Roles of RAD6 Epistasis Group Members in Spontaneous Polζ-Dependent Translesion Synthesis in Saccharomyces cerevisiae , 2005, Genetics.

[39]  R. Woodgate,et al.  The Relative Roles in Vivo of Saccharomyces cerevisiae Pol η, Pol ζ, Rev1 Protein and Pol32 in the Bypass and Mutation Induction of an Abasic Site, T-T (6-4) Photoadduct and T-T cis-syn Cyclobutane Dimer , 2005, Genetics.

[40]  J. Sale Immunoglobulin diversification in DT40: a model for vertebrate DNA damage tolerance. , 2004, DNA repair.

[41]  T. Honjo,et al.  Separate domains of AID are required for somatic hypermutation and class-switch recombination , 2004, Nature Immunology.

[42]  M. Yamaizumi,et al.  Multiple roles of Rev3, the catalytic subunit of polζ in maintaining genome stability in vertebrates , 2003, The EMBO journal.

[43]  J. Sale,et al.  Rev1 is essential for DNA damage tolerance and non‐templated immunoglobulin gene mutation in a vertebrate cell line , 2003, The EMBO journal.

[44]  岡田 崇 Involvement of vertebrate Polκ in Rad18-independent postreplication repair of UV damage , 2003 .

[45]  Osamu Ogawa,et al.  Involvement of Vertebrate Polκ in Rad18-independent Postreplication Repair of UV Damage* 210 , 2002, The Journal of Biological Chemistry.

[46]  M. Yamaizumi,et al.  RAD18 and RAD54 cooperatively contribute to maintenance of genomic stability in vertebrate cells , 2002, The EMBO journal.

[47]  J. Hurwitz,et al.  The Influence of the Cdc27 Subunit on the Properties of theSchizosaccharomyces pombe DNA Polymerase δ* , 2002, The Journal of Biological Chemistry.

[48]  M. Neuberger,et al.  Altering the pathway of immunoglobulin hypermutation by inhibiting uracil-DNA glycosylase , 2002, Nature.

[49]  F. Galibert,et al.  Pol32, a subunit of Saccharomyces cerevisiae DNA polymerase delta, suppresses genomic deletions and is involved in the mutagenic bypass pathway. , 2002, Genetics.

[50]  H. Arakawa,et al.  Requirement of the Activation-Induced Deaminase (AID) Gene for Immunoglobulin Gene Conversion , 2002, Science.

[51]  G. Dianov,et al.  Reconstitution of human DNA polymerase delta using recombinant baculoviruses: the p12 subunit potentiates DNA polymerizing activity of the four-subunit enzyme. , 2002, The Journal of biological chemistry.

[52]  M. Neuberger,et al.  Ablation of XRCC2/3 transforms immunoglobulin V gene conversion into somatic hypermutation , 2001, Nature.

[53]  H. Yoshikawa,et al.  The human homologue of fission Yeast cdc27, p66, is a component of active human DNA polymerase delta. , 2001, Journal of biochemistry.

[54]  Robert E. Johnson,et al.  Roles of yeast DNA polymerases delta and zeta and of Rev1 in the bypass of abasic sites. , 2001, Genes & development.

[55]  F. Galibert,et al.  POL32, a subunit of the Saccharomyces cerevisiae DNA polymerase δ, defines a link between DNA replication and the mutagenic bypass repair pathway , 2000, Current Genetics.

[56]  P. Burgers,et al.  Characterization of the Two Small Subunits of Saccharomyces cerevisiae DNA Polymerase δ* , 1998, The Journal of Biological Chemistry.

[57]  Ana Pombo,et al.  Replicon Clusters Are Stable Units of Chromosome Structure: Evidence That Nuclear Organization Contributes to the Efficient Activation and Propagation of S Phase in Human Cells , 1998, The Journal of cell biology.

[58]  R. Wood,et al.  Which DNA polymerases are used for DNA-repair in eukaryotes? , 1997, Carcinogenesis.

[59]  L. Loeb,et al.  DNA polymerase delta is required for base excision repair of DNA methylation damage in Saccharomyces cerevisiae. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[60]  R. Wood,et al.  Proliferating cell nuclear antigen is required for DNA excision repair , 1992, Cell.

[61]  G. Faye,et al.  Structure and function of the Saccharomyces cerevisiae CDC2 gene encoding the large subunit of DNA polymerase III. , 1989, The EMBO journal.