Tautomerization in the formation and collision-induced dissociation of alkali metal cation-cytosine complexes.

Noncovalent interactions between alkali metal cations and the various low-energy tautomeric forms of cytosine are investigated both experimentally and theoretically. Threshold collision-induced dissociation (CID) of M(+)(cytosine) complexes with Xe is studied using guided ion beam tandem mass spectrometry, where M(+) = Li(+), Na(+), and K(+). In all cases, the only dissociation pathway observed corresponds to endothermic loss of the intact cytosine molecule. The cross-section thresholds are interpreted to yield 0 and 298 K bond dissociation energies (BDEs) for the M(+)(cytosine) complexes after accounting for the effects of multiple ion-neutral collisions, the kinetic and internal energy distributions of the reactants, and dissociation lifetimes. Ab initio calculations are performed at the MP2(full)/6-31G* level of theory to determine the structures of the neutral cytosine tautomers, the M(+)(cytosine) complexes, and the TSs for unimolecular tautomerization. The molecular parameters derived from these structures are employed for the calculation of the unimolecular rates for tautomerization and the thermochemical analysis of the experimental data. Theoretical BDEs of the various M(+)(cytosine) complexes and the energy barriers for the unimolecular tautomerization of these complexes are determined at MP2(full)/6-311+G(2d,2p) level of theory using the MP2(full)/6-31G* optimized geometries. In addition, BDEs for the Li(+)(cytosine) complexes are also determined at the G3 level of theory. Based upon the tautomeric mixture generated upon thermal vaporization of cytosine, calculated M(+)-cytosine BDEs and barriers to tautomerization for the low-energy tautomeric forms of M(+)(cytosine), and measured thresholds for CID of M(+)(cytosine) complexes, we conclude that tautomerization occurs during both complex formation and CID.

[1]  P. Armentrout,et al.  A critical evaluation of the experimental and theoretical determination of lithium cation affinities , 2007 .

[2]  N. Russo,et al.  A theoretical study on tautomerization processes of dehydrated and monohydrated cytosine , 2007 .

[3]  M. Rodgers,et al.  Influence of thioketo substitution on the properties of uracil and its noncovalent interactions with alkali metal ions: threshold collision-induced dissociation and theoretical studies. , 2006, The journal of physical chemistry. A.

[4]  M. Rodgers,et al.  Influence of methylation on the properties of uracil and its noncovalent interactions with alkali metal ions: Threshold collision-induced dissociation and theoretical studies , 2005 .

[5]  M. Rodgers,et al.  Influence of halogenation on the properties of uracil and its noncovalent interactions with alkali metal ions. Threshold collision-induced dissociation and theoretical studies. , 2004, Journal of the American Chemical Society.

[6]  M. Rodgers,et al.  Theoretical studies of the unimolecular and bimolecular tautomerization of cytosine , 2004 .

[7]  P. B. Armentrout,et al.  The kinetic energy dependence of association reactions. A new thermokinetic method for large systems , 2003 .

[8]  F. J. Luque,et al.  Correlated ab initio study of nucleic acid bases and their tautomers in the gas phase, in a microhydrated environment and in aqueous solutionDedicated to the memory of our friend and distinguished scientist Professor Peter Kollman. , 2002 .

[9]  P. Armentrout,et al.  Influence of d orbital occupation on the binding of metal ions to adenine. , 2002, Journal of the American Chemical Society.

[10]  G. Fogarasi,et al.  Relative Stabilities of Three Low-Energy Tautomers of Cytosine: A Coupled Cluster Electron Correlation Study , 2002 .

[11]  N. Russo,et al.  Bond energies and attachments sites of sodium and potassium cations to DNA and RNA nucleic acid bases in the gas phase. , 2001, Journal of the American Chemical Society.

[12]  P. Armentrout,et al.  Guided ion beam study of collision-induced dissociation dynamics: integral and differential cross sections , 2001 .

[13]  N. Russo,et al.  Lithium Affinity for DNA and RNA Nucleobases. The Role of Theoretical Information in the Elucidation of the Mass Spectrometry Data , 2001 .

[14]  P. Armentrout,et al.  Noncovalent Interactions of Nucleic Acid Bases (Uracil, Thymine, and Adenine) with Alkali Metal Ions. Threshold Collision-Induced Dissociation and Theoretical Studies , 2000 .

[15]  R. Kobayashi A CCSD(T) STUDY OF THE RELATIVE STABILITIES OF CYTOSINE TAUTOMERS , 1998 .

[16]  G. Fogarasi High-level electron correlation calculations on some tautomers of cytosine , 1997 .

[17]  P. B. Armentrout,et al.  Statistical modeling of collision-induced dissociation thresholds , 1997 .

[18]  C. Wesdemiotis,et al.  Li+, Na+, and K+ Binding to the DNA and RNA Nucleobases. Bond Energies and Attachment Sites from the Dissociation of Metal Ion-Bound Heterodimers , 1996 .

[19]  F. J. Luque,et al.  TAUTOMERISM AND PROTONATION OF GUANINE AND CYTOSINE. IMPLICATIONS IN THE FORMATION OF HYDROGEN-BONDED COMPLEXES , 1996 .

[20]  J. Florián,et al.  IR and Raman Spectra, Tautomeric Stabilities, and Scaled Quantum Mechanical Force Fields of Protonated Cytosine† , 1996 .

[21]  Jerzy Leszczynski,et al.  Molecular Structure and Vibrational IR Spectra of Cytosine and Its Thio and Seleno Analogues by Density Functional Theory and Conventional ab initio Calculations , 1996 .

[22]  L. Adamowicz,et al.  Theoretical investigations of proton transfer reactions in a hydrogen bonded complex of cytosine with water , 1995 .

[23]  Benny G. Johnson,et al.  On the intermolecular vibrational modes of the guanine⋯cytosine, adenine⋯thymine and formamide⋯formamide H-bonded dimers , 1995 .

[24]  B. Roos,et al.  Theoretical Study of the Electronic Spectrum of Cytosine , 1995 .

[25]  Richard J. Hall,et al.  Tautomeric equilibria in 2-hydroxypyridine and in cytosine. An assessment of density functional methods, including gradient corrections , 1994 .

[26]  J. Šponer,et al.  Nonplanar geometries of DNA bases. Ab initio second-order Moeller-Plesset study , 1994 .

[27]  P. Armentrout,et al.  Stepwise solvation enthalpies of protonated water clusters: collision-induced dissociation as an alternative to equilibrium studies , 1993 .

[28]  Farooq A. Khan,et al.  Sequential bond energies of chromium carbonyls (Cr(CO)x+, x = 1-6) , 1993 .

[29]  P. Armentrout,et al.  Effect of internal excitation on the collision-induced dissociation and reactivity of Co2+ , 1990 .

[30]  D. McNaughton,et al.  Tautomers of cytosine by microwave spectroscopy , 1989 .

[31]  K. Kubulat,et al.  Matrix isolation infrared studies of nucleic acid constituents. 5. Experimental matrix-isolation and theoretical ab initio SCF molecular orbital studies of the infrared spectra of cytosine monomers , 1988 .

[32]  P. Armentrout,et al.  Collision-induced dissociation of vanadium monoxide ion , 1986 .

[33]  P. Armentrout,et al.  Translational energy dependence of Ar++XY→ArX++Y (XY=H2,D2,HD) from thermal to 30 eV c.m. , 1985 .

[34]  M. Bowers,et al.  THEORY OF TRANSLATIONALLY DRIVEN REACTIONS , 1979 .

[35]  S. Stein,et al.  On the use of exact state counting methods in RRKM rate calculations , 1977 .

[36]  D. Gerlich,et al.  Integral cross sections for ion—molecule reactions. I. The guided beam technique , 1974 .

[37]  Terry Beyer,et al.  Algorithm 448: number of multiply-restricted partitions , 1973, CACM.

[38]  S. Stein,et al.  Accurate evaluation of internal energy level sums and densities including anharmonic oscillators and hindered rotors , 1973 .

[39]  J. W. Humberston,et al.  The polarizability of helium , 1972 .

[40]  A. E. Kingston,et al.  The refractive indices and Verdet constants of the inert gases , 1960, Proceedings of the Royal Society of London. Series A. Mathematical and Physical Sciences.

[41]  George Gioumousis,et al.  Reactions of Gaseous Molecule Ions with Gaseous Molecules. V. Theory , 1958 .

[42]  J. Šponer,et al.  H-Bonded and Stacked DNA Base Pairs: Cytosine Dimer. An Ab Initio Second-Order Moeller-Plesset Study , 1995 .

[43]  J. Šponer,et al.  Bifurcated hydrogen bonds in DNA crystal structures. An ab initio quantum chemical study , 1994 .