The exchangeability of shape

BackgroundLandmark based geometric morphometrics (GM) allows the quantitative comparison of organismal shapes. When applied to systematics, it is able to score shape changes which often are undetectable by traditional morphological studies and even by classical morphometric approaches. It has thus become a fast and low cost candidate to identify cryptic species. Due to inherent mathematical properties, shape variables derived from one set of coordinates cannot be compared with shape variables derived from another set. Raw coordinates which produce these shape variables could be used for data exchange, however they contain measurement error. The latter may represent a significant obstacle when the objective is to distinguish very similar species.ResultsWe show here that a single user derived dataset produces much less classification error than a multiple one. The question then becomes how to circumvent the lack of exchangeability of shape variables while preserving a single user dataset. A solution to this question could lead to the creation of a relatively fast and inexpensive systematic tool adapted for the recognition of cryptic species.ConclusionsTo preserve both exchangeability of shape and a single user derived dataset, our suggestion is to create a free access bank of reference images from which one can produce raw coordinates and use them for comparison with external specimens. Thus, we propose an alternative geometric descriptive system that separates 2-D data gathering and analyzes.

[1]  L. F. Marcus,et al.  Advances in Morphometrics , 1996, NATO ASI Series.

[2]  Norman MacLeod,et al.  A Comparison Between Morphometric and Artificial Neural-Net Approaches to the Automated Species-Recognition Problem in Systematics , 2004 .

[3]  Christian Peter Klingenberg,et al.  MULTIVARIATE ALLOMETRY , 2007 .

[4]  H. David Sheets,et al.  Geometric morphometrics for biologists : a primer , 2004 .

[5]  F. Bookstein,et al.  Morphometric Tools for Landmark Data: Geometry and Biology , 1999 .

[6]  R. Lampman,et al.  Statistical appraisal of the weight-wing length relationship of mosquitoes. , 1992, Journal of medical entomology.

[7]  Fred L Bookstein,et al.  Computing the uniform component of shape variation. , 2003, Systematic biology.

[8]  R. Gurgel-Gonçalves,et al.  Is Rhodnius prolixus (Triatominae) invading houses in central Brazil? , 2008, Acta tropica.

[9]  Dennis E. Slice,et al.  Contributions of Morphometrics to Medical Entomology , 2006 .

[10]  J. Dujardin,et al.  The Diachasmimorpha longicaudata complex: Reproductive isolation and geometric patterns of the wing , 2009 .

[11]  T. P. Burnaby Growth-Invariant Discriminant Functions and Generalized Distances , 1966 .

[12]  M. Kenis,et al.  Discrimination of Eubazus (Hymenoptera, Braconidae) sibling species using geometric morphometrics analysis of wing venation , 2007 .

[13]  J. Dujardin,et al.  Growth changes in Rhodnius pallescens under simulated domestic and sylvatic conditions. , 2009, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

[14]  T. Backeljau,et al.  Multivariate morphometrics of soft body parts in terrestrial slugs: comparison between two datasets, error assessment and taxonomic implications , 2002 .

[15]  F. Rohlf,et al.  Morphometric Spaces, Shape Components and the Effects of Linear Transformations , 1996 .

[16]  Kevin J. Gaston,et al.  Species-identification of wasps using principal component associative memories , 1999, Image Vis. Comput..

[17]  R. Nasci Relationship of wing length to adult dry weight in several mosquito species (Diptera: Culicidae). , 1990, Journal of medical entomology.

[18]  F. Bookstein,et al.  Proceedings of the Michigan Morphometrics Workshop , 1992 .

[19]  J. Dujardin,et al.  Wing geometry as a tool for studying the Lutzomyia longipalpis (Diptera: Psychodidae) complex. , 2001, Memorias do Instituto Oswaldo Cruz.

[20]  G. H. Albrecht,et al.  Multivariate Analysis and the Study of Form, with Special Reference to Canonical Variate Analysis , 1980 .

[21]  J. Dujardin,et al.  The geometric approach to explore the Bactrocera tau complex (Diptera: Tephritidae) in Thailand. , 2010, Zoology.

[22]  C. B. Marcondes,et al.  Distinction of males of the Lutzomyia intermedia (Lutz & Neiva, 1912) species complex by ratios between dimensions and by an artificial neural network (Diptera: Psychodidae, Phlebotominae). , 2000, Memorias do Instituto Oswaldo Cruz.

[23]  Neil A. Thacker,et al.  Automatic Identification of Morphometric Landmarks in Digital Images , 2007, BMVC.

[24]  F. Rohlf,et al.  A revolution morphometrics. , 1993, Trends in ecology & evolution.

[25]  J. Dujardin,et al.  Wing shape divergence between Rhodnius prolixus from Cojedes (Venezuela) and Rhodnius robustus from Mérida (Venezuela). , 2002, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

[26]  A. Rojas de Arias,et al.  Wing geometry in Triatoma infestans (Klug) and T. melanosoma Martinez, Olmedo & Carcavallo (Hemiptera: Reduviidae) , 2003 .

[27]  J. Dujardin,et al.  Genetic contribution to variation in larval development time, adult size, and longevity of starved adults of Anopheles gambiae. , 2006, Infection, Genetics and Evolution.

[28]  J. Dujardin,et al.  Geographical versus interspecific differentiation of sand flies (Diptera: Psychodidae): a landmark data analysis , 2003, Bulletin of Entomological Research.

[29]  A. Valdecasas,et al.  Landmark superimposition for taxonomic identification , 2004 .

[30]  R. M. Morales Vargas,et al.  Climate associated size and shape changes in Aedes aegypti (Diptera: Culicidae) populations from Thailand. , 2010, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

[31]  J. Dujardin Morphometrics applied to medical entomology. , 2008, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

[32]  W. Wheeler,et al.  Measurements of Canada goose morphology : Sources of error and effects on classification of subspecies , 2001 .

[33]  F. Rohlf,et al.  Geometric morphometrics: Ten years of progress following the ‘revolution’ , 2004 .

[34]  R. B. Payne Systematic notes on Asian birds. 20. Recent additions to the list of type specimens of birds collected by Walter Koelz in the University of Michigan Museum of Zoology , 2001 .

[35]  J. Dujardin,et al.  Deciphering morphology in Triatominae: the evolutionary signals. , 2009, Acta tropica.

[36]  D. Slice Landmark coordinates aligned by procrustes analysis do not lie in Kendall's shape space. , 2001, Systematic biology.

[37]  Rudolf Meier,et al.  Species Concepts and Phylogenetic Theory , 2000 .

[38]  L. B. Klaczko,et al.  Wing morphometry as a tool for correct identification of primary and secondary New World screwworm fly , 2009, Bulletin of Entomological Research.

[39]  C. Villemant,et al.  Combining geometric morphometrics with pattern recognition for the investigation of species complexes , 2003 .

[40]  J. Dujardin,et al.  Rhodnius robustus in Bolivia identified by its wings. , 2001, Memorias do Instituto Oswaldo Cruz.

[41]  G. H. Albrecht,et al.  Ratios as a size adjustment in morphometrics. , 1993, American journal of physical anthropology.

[42]  G. Arnqvist,et al.  Measurement error in geometric morphometrics : Empirical strategies to assess and reduce its impact on measures of shape , 1998 .

[43]  D. Kendall SHAPE MANIFOLDS, PROCRUSTEAN METRICS, AND COMPLEX PROJECTIVE SPACES , 1984 .

[44]  J. Dujardin,et al.  Wing shape of dengue vectors from around the world. , 2010, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

[45]  Paul Galpern,et al.  Automated measurement of Drosophila wings , 2003, BMC Evolutionary Biology.

[46]  Geoffrey C. Bowker Biodiversity Datadiversity , 2000 .

[47]  B. Alten,et al.  Phenotypic variation among local populations of phlebotomine sand flies (Diptera: Psychodidae) in southern Turkey , 2007, Journal of vector ecology : journal of the Society for Vector Ecology.