Clinical integration of next-generation sequencing technology.
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M J Becich | R R Gullapalli | M Lyons-Weiler | P Petrosko | R Dhir | W A LaFramboise | Rama R. Gullapalli | M. Becich | R. Dhir | W. LaFramboise | M. Lyons-Weiler | P. Petrosko | R. Gullapalli | W. Laframboise | Patti Petrosko
[1] A. Børresen-Dale,et al. The Life History of 21 Breast Cancers , 2012, Cell.
[2] T. Dallman,et al. Performance comparison of benchtop high-throughput sequencing platforms , 2012, Nature Biotechnology.
[3] Mark T. W. Ebbert,et al. Agreement in risk prediction between the 21-gene recurrence score assay (Oncotype DX®) and the PAM50 breast cancer intrinsic Classifier™ in early-stage estrogen receptor-positive breast cancer. , 2012, The oncologist.
[4] Christopher A. Miller,et al. VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing. , 2012, Genome research.
[5] Ken Chen,et al. SomaticSniper: identification of somatic point mutations in whole genome sequencing data , 2012, Bioinform..
[6] M. Cronin,et al. Whole cancer genome sequencing by next-generation methods. , 2011, American journal of clinical pathology.
[7] You-Qiang Song,et al. Retraction: Evaluation of next-generation sequencing software in mapping and assembly. , 2011, Journal of Human Genetics.
[8] Lei Li,et al. miRDeep-P: a computational tool for analyzing the microRNA transcriptome in plants , 2011, Bioinform..
[9] A. McKenna,et al. The Mutational Landscape of Head and Neck Squamous Cell Carcinoma , 2011, Science.
[10] M. DePristo,et al. A framework for variation discovery and genotyping using next-generation DNA sequencing data , 2011, Nature Genetics.
[11] M. Herlyn,et al. PLX4032, a potent inhibitor of the B‐Raf V600E oncogene, selectively inhibits V600E‐positive melanomas , 2010, Pigment cell & melanoma research.
[12] Andrew Menzies,et al. The patterns and dynamics of genomic instability in metastatic pancreatic cancer , 2010, Nature.
[13] D. Altshuler,et al. A map of human genome variation from population-scale sequencing , 2010, Nature.
[14] Sharon R Grossman,et al. Integrating common and rare genetic variation in diverse human populations , 2010, Nature.
[15] Daniel R Zerbino,et al. Using the Velvet de novo Assembler for Short‐Read Sequencing Technologies , 2010, Current protocols in bioinformatics.
[16] M. Boguski,et al. A call to action: training pathology residents in genomics and personalized medicine. , 2010, American journal of clinical pathology.
[17] F. Collins,et al. Genomic medicine--an updated primer. , 2010, The New England journal of medicine.
[18] Elias Campo Guerri,et al. International network of cancer genome projects , 2010, Nature.
[19] J. Maguire,et al. Integrative analysis of the melanoma transcriptome. , 2010, Genome research.
[20] J. Venter,et al. Multiple personal genomes await , 2010, Nature.
[21] Kevin P. Murphy,et al. SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors , 2010, Bioinform..
[22] Ryan D. Morin,et al. Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution , 2009, Nature.
[23] R. Wilson,et al. BreakDancer: An algorithm for high resolution mapping of genomic structural variation , 2009, Nature Methods.
[24] Kai Ye,et al. Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads , 2009, Bioinform..
[25] Gonçalo R. Abecasis,et al. The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..
[26] Steven J. M. Jones,et al. Abyss: a Parallel Assembler for Short Read Sequence Data Material Supplemental Open Access , 2022 .
[27] Lior Pachter,et al. Sequence Analysis , 2020, Definitions.
[28] Michael Brudno,et al. SHRiMP: Accurate Mapping of Short Color-space Reads , 2009, PLoS Comput. Biol..
[29] Timothy B. Stockwell,et al. Evaluation of next generation sequencing platforms for population targeted sequencing studies , 2009, Genome Biology.
[30] Weng-Keen Wong,et al. QSRA – a quality-value guided de novo short read assembler , 2009, BMC Bioinformatics.
[31]
R. Durbin,et al.
Mapping Quality Scores Mapping Short Dna Sequencing Reads and Calling Variants Using P ,
2022
.
[32]
Bin Ma,et al.
ZOOM! Zillions of oligos mapped
,
2008,
Bioinform..
[33]
Hanlee P. Ji,et al.
Next-generation DNA sequencing
,
2008,
Nature Biotechnology.
[34]
Vincent Moulton,et al.
A toolkit for analysing large-scale plant small RNA datasets
,
2008,
Bioinform..
[35]
Antony V. Cox,et al.
Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing
,
2008,
Nature Genetics.
[36]
David Hernández,et al.
De novo bacterial genome sequencing: millions of very short reads assembled on a desktop computer.
,
2008,
Genome research.
[37]
E. Birney,et al.
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
,
2008,
Genome research.
[38]
N. Rajewsky,et al.
Discovering microRNAs from deep sequencing data using miRDeep
,
2008,
Nature Biotechnology.
[39]
S. Salzberg,et al.
Bioinformatics challenges of new sequencing technology.
,
2008,
Trends in genetics : TIG.
[40]
Ruiqiang Li,et al.
SOAP: short oligonucleotide alignment program
,
2008,
Bioinform..
[41]
Mark J. P. Chaisson,et al.
Short read fragment assembly of bacterial genomes.
,
2008,
Genome research.
[42]
Derek Y. Chiang,et al.
Characterizing the cancer genome in lung adenocarcinoma
,
2007,
Nature.
[43]
Francis S Collins,et al.
Mapping the cancer genome. Pinpointing the genes involved in cancer will help chart a new course across the complex landscape of human malignancies.
,
2007,
Scientific American.
[44]
Francis S. Collins,et al.
Mapping the cancer genome
,
2007
.
[45]
P. Collins,et al.
Performance comparison of one-color and two-color platforms within the Microarray Quality Control (MAQC) project
,
2006,
Nature Biotechnology.
[46]
M. West,et al.
Embracing the complexity of genomic data for personalized medicine.
,
2006,
Genome research.
[47]
Ross Lippert,et al.
A Space-Efficient Construction of the Burrows-Wheeler Transform for Genomic Data
,
2005,
J. Comput. Biol..
[48]
E. Lander,et al.
Finishing the euchromatic sequence of the human genome
,
2004
.
[49]
S. Gabriel,et al.
EGFR Mutations in Lung Cancer: Correlation with Clinical Response to Gefitinib Therapy
,
2004,
Science.
[50]
Van,et al.
A gene-expression signature as a predictor of survival in breast cancer.
,
2002,
The New England journal of medicine.
[51]
J. Gulcher,et al.
Population genomics: laying the groundwork for genetic disease modeling and targeting.
,
1998
.
[52]
Susanne Horn,et al.
Target enrichment via DNA hybridization capture.
,
2012,
Methods in molecular biology.
[53]
M. Metzker.
Sequencing technologies — the next generation
,
2010,
Nature Reviews Genetics.
[54]
Yuan Qi,et al.
Integrated Genomic Analysis Identifies Clinically Relevant Subtypes of Glioblastoma Characterized by Abnormalities in PDGFRA , IDH 1 , EGFR , and NF 1 Citation Verhaak
,
2010
.
[55]
E. Zielińska.
Are Women Better PIs
,
2010
.
[56]
Derek Y. Chiang,et al.
High-resolution mapping of copy-number alterations with massively parallel sequencing
,
2009,
Nature Methods.