Unmasking local activity within local field potentials (LFPs) by removing distal electrical signals using independent component analysis

Local field potentials (LFPs) are commonly thought to reflect the aggregate dynamics in local neural circuits around recording electrodes. However, we show that when LFPs are recorded in awake behaving animals against a distal reference on the skull as commonly practiced, LFPs are significantly contaminated by non-local and non-neural sources arising from the reference electrode and from movement-related noise. In a data set with simultaneously recorded LFPs and electroencephalograms (EEGs) across multiple brain regions while rats perform an auditory oddball task, we used independent component analysis (ICA) to identify signals arising from electrical reference and from volume-conducted noise based on their distributed spatial pattern across multiple electrodes and distinct power spectral features. These sources of distal electrical signals collectively accounted for 23–77% of total variance in unprocessed LFPs, as well as most of the gamma oscillation responses to the target stimulus in EEGs. Gamma oscillation power was concentrated in volume-conducted noise and was tightly coupled with the onset of licking behavior, suggesting a likely origin of muscle activity associated with body movement or orofacial movement. The removal of distal signal contamination also selectively reduced correlations of LFP/EEG signals between distant brain regions but not within the same region. Finally, the removal of contamination from distal electrical signals preserved an event-related potential (ERP) response to auditory stimuli in the frontal cortex and also increased the coupling between the frontal ERP amplitude and neuronal activity in the basal forebrain, supporting the conclusion that removing distal electrical signals unmasked local activity within LFPs. Together, these results highlight the significant contamination of LFPs by distal electrical signals and caution against the straightforward interpretation of unprocessed LFPs. Our results provide a principled approach to identify and remove such contamination to unmask local LFPs.

[1]  Masayuki Kobayashi,et al.  Electrophysiological analysis of rhythmic jaw movements in the freely moving mouse , 2002, Physiology and Behavior.

[2]  C. Koch,et al.  The origin of extracellular fields and currents — EEG, ECoG, LFP and spikes , 2012, Nature Reviews Neuroscience.

[3]  C. Schroeder,et al.  How Local Is the Local Field Potential? , 2011, Neuron.

[4]  J. Fermaglich Electric Fields of the Brain: The Neurophysics of EEG , 1982 .

[5]  Paul L. Nunez,et al.  The surface laplacian, high resolution EEG and controversies , 2005, Brain Topography.

[6]  N. Crone,et al.  High-frequency gamma oscillations and human brain mapping with electrocorticography. , 2006, Progress in brain research.

[7]  Bijan Pesaran,et al.  Temporal structure in neuronal activity during working memory in macaque parietal cortex , 2000, Nature Neuroscience.

[8]  Oscar Herreras,et al.  Disentanglement of local field potential sources by independent component analysis , 2010, Journal of Computational Neuroscience.

[9]  Terrence J. Sejnowski,et al.  Independent Component Analysis Using an Extended Infomax Algorithm for Mixed Subgaussian and Supergaussian Sources , 1999, Neural Computation.

[10]  E. Whitham,et al.  Scalp electrical recording during paralysis: Quantitative evidence that EEG frequencies above 20Hz are contaminated by EMG , 2007, Clinical Neurophysiology.

[11]  Toshihide Sato,et al.  The coordination of rhythmical drinking behavior with swallowing in rabbits , 1994, Physiology & Behavior.

[12]  Eishi Asano,et al.  Clinical significance and developmental changes of auditory-language-related gamma activity , 2013, Clinical Neurophysiology.

[13]  S Makeig,et al.  Blind separation of auditory event-related brain responses into independent components. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[14]  C. Schroeder,et al.  Striate cortical contribution to the surface-recorded pattern-reversal vep in the alert monkey , 1991, Vision Research.

[15]  Terrence J. Sejnowski,et al.  Enhanced detection of artifacts in EEG data using higher-order statistics and independent component analysis , 2007, NeuroImage.

[16]  Martin J. McKeown,et al.  Removing electroencephalographic artifacts: comparison between ICA and PCA , 1998, Neural Networks for Signal Processing VIII. Proceedings of the 1998 IEEE Signal Processing Society Workshop (Cat. No.98TH8378).

[17]  Sanqing Hu,et al.  Automatic Identification and Removal of Scalp Reference Signal for Intracranial EEGs Based on Independent Component Analysis , 2007, IEEE Transactions on Biomedical Engineering.

[18]  V. A. Makarov,et al.  Minor contribution of principal excitatory pathways to hippocampal LFPs in the anesthetized rat: a combined independent component and current source density study. , 2010, Journal of neurophysiology.

[19]  Hitten P. Zaveri,et al.  On the use of bipolar montages for time-series analysis of intracranial electroencephalograms , 2006, Clinical Neurophysiology.

[20]  Akitoshi Hanazawa,et al.  Occipital gamma-oscillations modulated during eye movement tasks: Simultaneous eye tracking and electrocorticography recording in epileptic patients , 2011, NeuroImage.

[21]  Shi-Chieh Lin,et al.  A frontal cortex event-related potential driven by the basal forebrain , 2014, eLife.

[22]  M. Nicolelis,et al.  Reconstructing the Engram: Simultaneous, Multisite, Many Single Neuron Recordings , 1997, Neuron.

[23]  Oscar Herreras,et al.  Can pathway-specific LFPs be obtained in cytoarchitectonically complex structures? , 2014, Front. Syst. Neurosci..

[24]  V. A. Makarov,et al.  New uses of LFPs: Pathway-specific threads obtained through spatial discrimination , 2015, Neuroscience.

[25]  Terrence J. Sejnowski,et al.  An Information-Maximization Approach to Blind Separation and Blind Deconvolution , 1995, Neural Computation.

[26]  Tzyy-Ping Jung,et al.  Extended ICA Removes Artifacts from Electroencephalographic Recordings , 1997, NIPS.

[27]  Bijan Pesaran,et al.  Optimizing the Decoding of Movement Goals from Local Field Potentials in Macaque Cortex , 2011, The Journal of Neuroscience.

[28]  Nicholas G Hatsopoulos,et al.  The science of neural interface systems. , 2009, Annual review of neuroscience.

[29]  Oscar Herreras,et al.  Cytoarchitectonic and Dynamic Origins of Giant Positive Local Field Potentials in the Dentate Gyrus , 2013, The Journal of Neuroscience.

[30]  M. Lobo,et al.  Shining light on motivation, emotion, and memory processes , 2015, Front. Behav. Neurosci..

[31]  G Fein,et al.  Common reference coherence data are confounded by power and phase effects. , 1988, Electroencephalography and clinical neurophysiology.

[32]  M. Carandini,et al.  Local Origin of Field Potentials in Visual Cortex , 2009, Neuron.

[33]  U. Mitzdorf Current source-density method and application in cat cerebral cortex: investigation of evoked potentials and EEG phenomena. , 1985, Physiological reviews.

[34]  D. Contreras,et al.  Spatiotemporal Analysis of Local Field Potentials and Unit Discharges in Cat Cerebral Cortex during Natural Wake and Sleep States , 1999, The Journal of Neuroscience.

[35]  Shi-Chieh Lin,et al.  Basal forebrain motivational salience signal enhances cortical processing and decision speed , 2015, Front. Behav. Neurosci..

[36]  T. Womelsdorf,et al.  Attentional Stimulus Selection through Selective Synchronization between Monkey Visual Areas , 2012, Neuron.

[37]  N. Logothetis,et al.  Neurophysiological investigation of the basis of the fMRI signal , 2001, Nature.

[38]  Mariano Sigman,et al.  CUDAICA: GPU Optimization of Infomax-ICA EEG Analysis , 2012, Comput. Intell. Neurosci..

[39]  Shlomit Yuval-Greenberg,et al.  Saccadic spike potentials in gamma-band EEG: Characterization, detection and suppression , 2010, NeuroImage.

[40]  E. Novikov,et al.  Scale-similar activity in the brain , 1997 .

[41]  J. Wolpaw,et al.  EMG contamination of EEG: spectral and topographical characteristics , 2003, Clinical Neurophysiology.

[42]  John P. Donoghue,et al.  Connecting cortex to machines: recent advances in brain interfaces , 2002, Nature Neuroscience.

[43]  Oscar Herreras,et al.  Determining the True Polarity and Amplitude of Synaptic Currents Underlying Gamma Oscillations of Local Field Potentials , 2013, PloS one.

[44]  Arnaud Delorme,et al.  EEGLAB: an open source toolbox for analysis of single-trial EEG dynamics including independent component analysis , 2004, Journal of Neuroscience Methods.

[45]  Richard P. Heitz,et al.  On the origin of event-related potentials indexing covert attentional selection during visual search. , 2009, Journal of neurophysiology.

[46]  E Donchin,et al.  A new method for off-line removal of ocular artifact. , 1983, Electroencephalography and clinical neurophysiology.

[47]  L. Swanson The Rat Brain in Stereotaxic Coordinates, George Paxinos, Charles Watson (Eds.). Academic Press, San Diego, CA (1982), vii + 153, $35.00, ISBN: 0 125 47620 5 , 1984 .

[48]  Y. Kawamura,et al.  EMG activities of masticatory muscles during licking in rats , 1982, Physiology & Behavior.

[49]  Jeffrey D. Schall,et al.  Review of signal distortion through metal microelectrode recording circuits and filters , 2008, Journal of Neuroscience Methods.

[50]  L. A. Geddes,et al.  Measurement of the Direct-Current (Faradic) Resistance of the Electrode-Electrolyte Interface for Commonly Used Electrode Materials , 2001, Annals of Biomedical Engineering.

[51]  G. V. Simpson,et al.  Cellular generators of the cortical auditory evoked potential initial component. , 1992, Electroencephalography and clinical neurophysiology.

[52]  P. Nunez,et al.  Spatial filtering and neocortical dynamics: estimates of EEG coherence , 1998, IEEE Transactions on Biomedical Engineering.

[53]  S. Harada,et al.  Functional Properties of Jaw and Tongue Muscles in Rats Fed a Liquid Diet after Being Weaned , 1998, Journal of dental research.

[54]  C. Bédard,et al.  Macroscopic models of local field potentials and the apparent 1/f noise in brain activity. , 2008, Biophysical journal.

[55]  M S Buchsbaum,et al.  Topographic mapping of EEG artifacts. , 1987, Clinical EEG.

[56]  V. Louis-Dorr,et al.  Reference estimation in EEG recordings , 2010, 2010 Annual International Conference of the IEEE Engineering in Medicine and Biology.

[57]  D. Tucker,et al.  EEG coherency. I: Statistics, reference electrode, volume conduction, Laplacians, cortical imaging, and interpretation at multiple scales. , 1997, Electroencephalography and clinical neurophysiology.

[58]  Justin C. Williams,et al.  Chronic neural recording using silicon-substrate microelectrode arrays implanted in cerebral cortex , 2004, IEEE Transactions on Biomedical Engineering.

[59]  I. Nelken,et al.  Transient Induced Gamma-Band Response in EEG as a Manifestation of Miniature Saccades , 2008, Neuron.

[60]  C. Bédard,et al.  Does the 1/f frequency scaling of brain signals reflect self-organized critical states? , 2006, Physical review letters.