Symbiosis insights through metagenomic analysis of a microbial consortium.
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Natalia N. Ivanova | R. Amann | H. Teeling | N. Dubilier | N. Kyrpides | E. Rubin | D. Boffelli | I. Anderson | T. Woyke | K. Barry | H. Shapiro | M. Richter | M. Mußmann | Marcel Huntemann | F. Gloeckner | E. Szeto | C. Bergin | Caroline Ruehland | M. Mussmann | F. O. Gloeckner
[1] Daniel S. Rokhsar,et al. JAZZ: A whole genome shotgun assembler , 2007 .
[2] Phat L Tran,et al. Metabolic Complementarity and Genomics of the Dual Bacterial Symbiosis of Sharpshooters , 2006, PLoS biology.
[3] E. Delong,et al. Community Genomics Among Stratified Microbial Assemblages in the Ocean's Interior , 2006, Science.
[4] Nikos Kyrpides,et al. The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide , 2005, Nucleic Acids Res..
[5] Inna Dubchak,et al. The integrated microbial genomes (IMG) system , 2005, Nucleic Acids Res..
[6] N. Dubilier,et al. Symbioses between bacteria and gutless marine oligochaetes. , 2006, Progress in molecular and subcellular biology.
[7] Colleen M. Cavanaugh,et al. Marine Chemosynthetic Symbioses , 2006 .
[8] C. Soares,et al. Sulphate respiration from hydrogen in Desulfovibrio bacteria: a structural biology overview. , 2005, Progress in biophysics and molecular biology.
[9] R. Amann,et al. Coexistence of Bacterial Sulfide Oxidizers, Sulfate Reducers, and Spirochetes in a Gutless Worm (Oligochaeta) from the Peru Margin , 2005, Applied and Environmental Microbiology.
[10] E. Greenberg,et al. Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with pathogenic congeners. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[11] Lila Kari,et al. The spectrum of genomic signatures: from dinucleotides to chaos game representation. , 2005, Gene.
[12] S. Tringe,et al. Comparative Metagenomics of Microbial Communities , 2004, Science.
[13] Eugene W. Myers,et al. PILER: identification and classification of genomic repeats , 2005, ISMB.
[14] N. Moran,et al. Genomic changes following host restriction in bacteria. , 2004, Current opinion in genetics & development.
[15] J. Handelsman. Metagenomics: Application of Genomics to Uncultured Microorganisms , 2004, Microbiology and Molecular Biology Reviews.
[16] J. Handelsman,et al. Metagenomics: genomic analysis of microbial communities. , 2004, Annual review of genetics.
[17] Frank Oliver Glöckner,et al. TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences , 2004, BMC Bioinformatics.
[18] Thomas Huber,et al. Bellerophon: a program to detect chimeric sequences in multiple sequence alignments , 2004, Bioinform..
[19] Robert M. Stroud,et al. Mechanism of Ammonia Transport by Amt/MEP/Rh: Structure of AmtB at 1.35 Å , 2004, Science.
[20] Katy J. Drewette,et al. Octaheme tetrathionate reductase is a respiratory enzyme with novel heme ligation , 2004, Nature Structural &Molecular Biology.
[21] Daniel Rokhsar,et al. Reverse Methanogenesis: Testing the Hypothesis with Environmental Genomics , 2004, Science.
[22] R. Amann,et al. Application of tetranucleotide frequencies for the assignment of genomic fragments. , 2004, Environmental microbiology.
[23] S. Brunak,et al. Improved prediction of signal peptides: SignalP 3.0. , 2004, Journal of molecular biology.
[24] S Miyano,et al. Open source clustering software. , 2004, Bioinformatics.
[25] D. Schleheck,et al. Rhodococcus opacus expresses the xsc gene to utilize taurine as a carbon source or as a nitrogen source but not as a sulfur source. , 2004, Microbiology.
[26] O. White,et al. Environmental Genome Shotgun Sequencing of the Sargasso Sea , 2004, Science.
[27] K. Schleifer,et al. ARB: a software environment for sequence data. , 2004, Nucleic acids research.
[28] M. E. Huigens,et al. Natural interspecific and intraspecific horizontal transfer of parthenogenesis–inducing Wolbachia in Trichogramma wasps , 2004, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[29] J. Banfield,et al. Community structure and metabolism through reconstruction of microbial genomes from the environment , 2004, Nature.
[30] E. Ruby,et al. We Get By with a Little Help from Our (Little) Friends , 2004, Science.
[31] A. Danchin,et al. The genome sequence of the entomopathogenic bacterium Photorhabdus luminescens , 2003, Nature Biotechnology.
[32] N. Moran,et al. Tracing the evolution of gene loss in obligate bacterial symbionts. , 2003, Current opinion in microbiology.
[33] Darren A. Natale,et al. The COG database: an updated version includes eukaryotes , 2003, BMC Bioinformatics.
[34] R. Giegerich,et al. GenDB--an open source genome annotation system for prokaryote genomes. , 2003, Nucleic acids research.
[35] Feng-Biao Guo,et al. ZCURVE: a new system for recognizing protein-coding genes in bacterial and archaeal genomes. , 2003, Nucleic acids research.
[36] Alfonso Valencia,et al. Reductive genome evolution in Buchnera aphidicola , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[37] P. Yancey,et al. Unusual organic osmolytes in deep-sea animals: adaptations to hydrostatic pressure and other perturbants. , 2002, Comparative biochemistry and physiology. Part A, Molecular & integrative physiology.
[38] E. Delong,et al. Microbial population genomics and ecology. , 2002, Current opinion in microbiology.
[39] Paramvir S. Dehal,et al. Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripes , 2002, Science.
[40] M. Polz,et al. Heteroduplexes in mixed-template amplifications: formation, consequence and elimination by 'reconditioning PCR'. , 2002, Nucleic acids research.
[41] W. J. Kent,et al. BLAT--the BLAST-like alignment tool. , 2002, Genome research.
[42] N. Moran,et al. Microbial Minimalism Genome Reduction in Bacterial Pathogens , 2002, Cell.
[43] O. Giere,et al. Taxonomy and new bacterial symbioses of gutless marine Tubificidae (Annelida, Oligochaeta) from the Island of Elba (Italy) , 2002 .
[44] S. Tabata,et al. Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110. , 2002, DNA research : an international journal for rapid publication of reports on genes and genomes.
[45] R. Sandberg,et al. Capturing whole-genome characteristics in short sequences using a naïve Bayesian classifier. , 2001, Genome research.
[46] S. Ragsdale,et al. Characterization of a Three-Component Vanillate O-Demethylase from Moorella thermoacetica , 2001, Journal of bacteriology.
[47] Michael Wagner,et al. Endosymbiotic sulphate-reducing and sulphide-oxidizing bacteria in an oligochaete worm , 2001, Nature.
[48] A. Krogh,et al. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. , 2001, Journal of molecular biology.
[49] F. Lallier,et al. Nitrogen metabolites and related enzymatic activities in the body fluids and tissues of the hydrothermal vent tubeworm Riftia pachyptila. , 2000, The Journal of experimental biology.
[50] J. Krzycki,et al. The Trimethylamine Methyltransferase Gene and Multiple Dimethylamine Methyltransferase Genes of Methanosarcina barkeri Contain In-Frame and Read-Through Amber Codons , 2000, Journal of bacteriology.
[51] K. Visick,et al. An Exclusive Contract: Specificity in the Vibrio fischeri-Euprymna scolopes Partnership , 2000, Journal of bacteriology.
[52] F. Vavre,et al. Phylogenetic evidence for horizontal transmission of Wolbachia in host-parasitoid associations. , 1999, Molecular biology and evolution.
[53] S. Salzberg,et al. Improved microbial gene identification with GLIMMER. , 1999, Nucleic acids research.
[54] P. Deschavanne,et al. Genomic signature: characterization and classification of species assessed by chaos game representation of sequences. , 1999, Molecular biology and evolution.
[55] P. Miller,et al. The identification of a new family of sugar efflux pumps in Escherichia coli , 1999, Molecular microbiology.
[56] G. Olsen,et al. CRITICA: coding region identification tool invoking comparative analysis. , 1999, Molecular biology and evolution.
[57] E. Ruby,et al. Competitive Dominance among Strains of Luminous Bacteria Provides an Unusual Form of Evidence for Parallel Evolution in Sepiolid Squid-Vibrio Symbioses , 1998, Applied and Environmental Microbiology.
[58] H. Gemerden,et al. Syntrophic growth of sulfate-reducing bacteria and colorless sulfur bacteria during oxygen limitation , 1997 .
[59] S. Eddy,et al. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. , 1997, Nucleic acids research.
[60] M. Adams,et al. Molecular and phylogenetic characterization of pyruvate and 2-ketoisovalerate ferredoxin oxidoreductases from Pyrococcus furiosus and pyruvate ferredoxin oxidoreductase from Thermotoga maritima , 1996, Journal of bacteriology.
[61] N. Scrutton,et al. The primary structure of Hyphomicrobium X dimethylamine dehydrogenase. Relationship to trimethylamine dehydrogenase and implications for substrate recognition. , 1995, European journal of biochemistry.
[62] S. Karlin,et al. Dinucleotide relative abundance extremes: a genomic signature. , 1995, Trends in genetics : TIG.
[63] D. Lane. 16S/23S rRNA sequencing , 1991 .
[64] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[65] O. Giere,et al. Structural organisation, transfer and biological fate of endosymbiotic bacteria in gutless oligochaetes , 1987 .
[66] L. Margulis. Symbiosis in cell evolution: Life and its environment on the early earth , 1981 .