Life beyond kinases: structure-based discovery of sorafenib as nanomolar antagonist of 5-HT receptors.
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Niu Huang | Bryan L Roth | Xi-Ping Huang | B. Roth | R. Whaley | Yanli Wang | S. Peng | Xingyu Lin | Ryan Whaley | Yanli Wang | Xi-Ping Huang | Shiming Peng | Xingyu Lin | Gang Chen | Guoliang Zhang | Simon X Wang | Shaohui Wang | Gang Chen | Guoliang Zhang | Simon X. Wang | Niu Huang | Shaohui Wang
[1] T. Klabunde,et al. Structure-based drug discovery using GPCR homology modeling: successful virtual screening for antagonists of the alpha1A adrenergic receptor. , 2005, Journal of medicinal chemistry.
[2] G. Klebe,et al. Unexpected nanomolar inhibition of carbonic anhydrase by COX-2-selective celecoxib: new pharmacological opportunities due to related binding site recognition. , 2004, Journal of medicinal chemistry.
[3] Claudio N. Cavasotto,et al. Ligand-Steered Modeling and Docking: A Benchmarking Study in Class A G-Protein-Coupled Receptors , 2010, J. Chem. Inf. Model..
[4] Michael J. Keiser,et al. Relating protein pharmacology by ligand chemistry , 2007, Nature Biotechnology.
[5] Leming Shi,et al. Identifying Unexpected Therapeutic Targets via Chemical-Protein Interactome , 2010, PloS one.
[6] M. Jacobson,et al. Automated site preparation in physics‐based rescoring of receptor ligand complexes , 2009, Proteins.
[7] B. Roth,et al. 5-Hydroxytryptamine2-family receptors (5-hydroxytryptamine2A, 5-hydroxytryptamine2B, 5-hydroxytryptamine2C): where structure meets function. , 1998, Pharmacology & therapeutics.
[8] D. Barford,et al. Mechanism of Activation of the RAF-ERK Signaling Pathway by Oncogenic Mutations of B-RAF , 2004, Cell.
[9] K. Palczewski,et al. Crystal Structure of Rhodopsin: A G‐Protein‐Coupled Receptor , 2002, Chembiochem : a European journal of chemical biology.
[10] D J Diller,et al. The different strategies for designing GPCR and kinase targeted libraries. , 2004, Combinatorial chemistry & high throughput screening.
[11] B. Shoichet,et al. Hierarchical docking of databases of multiple ligand conformations. , 2005, Current topics in medicinal chemistry.
[12] Narmada Thanki,et al. CDD: a Conserved Domain Database for the functional annotation of proteins , 2010, Nucleic Acids Res..
[13] Miles Congreve,et al. The impact of GPCR structures on pharmacology and structure‐based drug design , 2010, British journal of pharmacology.
[14] Kai Huang,et al. PharmMapper server: a web server for potential drug target identification using pharmacophore mapping approach , 2010, Nucleic Acids Res..
[15] Conrad C. Huang,et al. UCSF Chimera—A visualization system for exploratory research and analysis , 2004, J. Comput. Chem..
[16] K Schulten,et al. VMD: visual molecular dynamics. , 1996, Journal of molecular graphics.
[17] Richard A. Friesner,et al. Integrated Modeling Program, Applied Chemical Theory (IMPACT) , 2005, J. Comput. Chem..
[18] Niu Huang,et al. Physics-Based Scoring of Protein-Ligand Complexes: Enrichment of Known Inhibitors in Large-Scale Virtual Screening , 2006, J. Chem. Inf. Model..
[19] M. Jacobson,et al. Binding-Site Assessment by Virtual Fragment Screening , 2010, PloS one.
[20] Avner Schlessinger,et al. Ligand Discovery from a Dopamine D3 Receptor Homology Model and Crystal Structure , 2011, Nature chemical biology.
[21] M. Ivarsson,et al. Non-basic ligands for aminergic GPCRs: the discovery and development diaryl sulfones as selective, orally bioavailable 5-HT2A receptor antagonists for the treatment of sleep disorders. , 2010, Bioorganic & medicinal chemistry letters.
[22] Jian Wang,et al. In Silico Elucidation of the Molecular Mechanism Defining the Adverse Effect of Selective Estrogen Receptor Modulators , 2007, PLoS Comput. Biol..
[23] Michael J. Keiser,et al. Predicting new molecular targets for known drugs , 2009, Nature.
[24] B. Matthews,et al. A model binding site for testing scoring functions in molecular docking. , 2002, Journal of molecular biology.
[25] T. Darden,et al. Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems , 1993 .
[26] B. Roth,et al. Magic shotguns versus magic bullets: selectively non-selective drugs for mood disorders and schizophrenia , 2004, Nature Reviews Drug Discovery.
[27] Marta Filizola,et al. Modern homology modeling of G-protein coupled receptors: which structural template to use? , 2009, Journal of medicinal chemistry.
[28] M. Jacobson,et al. Virtual screening against highly charged active sites: identifying substrates of alpha-beta barrel enzymes. , 2005, Biochemistry.
[29] Michael M. Mysinger,et al. Automated Docking Screens: A Feasibility Study , 2009, Journal of medicinal chemistry.
[30] Lei Shi,et al. The binding site of aminergic G protein-coupled receptors: the transmembrane segments and second extracellular loop. , 2002, Annual review of pharmacology and toxicology.
[31] Jonathan S. Mason,et al. Progress in Structure Based Drug Design for G Protein-Coupled Receptors , 2011, Journal of medicinal chemistry.
[32] M. Jacobson,et al. Molecular mechanics methods for predicting protein-ligand binding. , 2006, Physical chemistry chemical physics : PCCP.
[33] B. Roth,et al. Identification of conserved aromatic residues essential for agonist binding and second messenger production at 5-hydroxytryptamine2A receptors. , 1997, Molecular pharmacology.
[34] W. Goddard,et al. Computational modeling of structure-function of g protein-coupled receptors with applications for drug design. , 2010, Current medicinal chemistry.
[35] H Weinstein,et al. Contribution of a helix 5 locus to selectivity of hallucinogenic and nonhallucinogenic ligands for the human 5-hydroxytryptamine2A and 5-hydroxytryptamine2C receptors: direct and indirect effects on ligand affinity mediated by the same locus. , 1996, Molecular pharmacology.
[36] B. Roth,et al. Potential modes of interaction of 9-aminomethyl-9,10-dihydroanthracene (AMDA) derivatives with the 5-HT2A receptor: a ligand structure-affinity relationship, receptor mutagenesis and receptor modeling investigation. , 2008, Journal of medicinal chemistry.
[37] B. Roth. Drugs and valvular heart disease. , 2007, The New England journal of medicine.
[38] Anat Levit,et al. Homology modeling of G-protein-coupled receptors with X-ray structures on the rise. , 2010, Current opinion in drug discovery & development.
[39] F. Sams-Dodd. Target-based drug discovery: is something wrong? , 2005, Drug discovery today.
[40] Wendy A. Warr,et al. ChEMBL. An interview with John Overington, team leader, chemogenomics at the European Bioinformatics Institute Outstation of the European Molecular Biology Laboratory (EMBL-EBI) , 2009, J. Comput. Aided Mol. Des..
[41] Stefano Costanzi,et al. On the applicability of GPCR homology models to computer-aided drug discovery: a comparison between in silico and crystal structures of the beta2-adrenergic receptor. , 2008, Journal of medicinal chemistry.
[42] M. Rowley,et al. Current and novel approaches to the drug treatment of schizophrenia. , 2001, Journal of medicinal chemistry.
[43] T. Blundell,et al. Comparative protein modelling by satisfaction of spatial restraints. , 1993, Journal of molecular biology.
[44] B. Roth,et al. A single point mutation (Phe340-->Leu340) of a conserved phenylalanine abolishes 4-[125I]iodo-(2,5-dimethoxy)phenylisopropylamine and [3H]mesulergine but not [3H]ketanserin binding to 5-hydroxytryptamine2 receptors. , 1993, Molecular pharmacology.
[45] Matthew P Jacobson,et al. Virtual Ligand Screening against Escherichia coli Dihydrofolate Reductase: Improving Docking Enrichment Using Physics-Based Methods , 2005, Journal of biomolecular screening.
[46] W. V. van Gunsteren,et al. A fast SHAKE algorithm to solve distance constraint equations for small molecules in molecular dynamics simulations , 2001 .
[47] J. Irwin,et al. Benchmarking sets for molecular docking. , 2006, Journal of medicinal chemistry.
[48] Mindy I. Davis,et al. A quantitative analysis of kinase inhibitor selectivity , 2008, Nature Biotechnology.
[49] S. Sorbi,et al. 5-HT2A receptor gene polymorphisms in anorexia nervosa and bulimia nervosa , 1999, Neuroscience Letters.
[50] H. Senderowitz,et al. G Protein-Coupled Receptors: target-based in silico screening. , 2009, Current pharmaceutical design.
[51] David S. Wishart,et al. DrugBank: a comprehensive resource for in silico drug discovery and exploration , 2005, Nucleic Acids Res..
[52] Brian K. Shoichet,et al. ZINC - A Free Database of Commercially Available Compounds for Virtual Screening , 2005, J. Chem. Inf. Model..
[53] Vadim Cherezov,et al. A specific cholesterol binding site is established by the 2.8 A structure of the human beta2-adrenergic receptor. , 2008, Structure.
[54] B. Roth,et al. Antagonist Functional Selectivity: 5-HT2A Serotonin Receptor Antagonists Differentially Regulate 5-HT2A Receptor Protein Level In Vivo , 2011, Journal of Pharmacology and Experimental Therapeutics.
[55] R. Friesner,et al. High‐resolution prediction of protein helix positions and orientations , 2004, Proteins.
[56] Didier Rognan,et al. A chemogenomic analysis of the transmembrane binding cavity of human G‐protein‐coupled receptors , 2005, Proteins.
[57] D. Gloriam,et al. Definition of the G protein-coupled receptor transmembrane bundle binding pocket and calculation of receptor similarities for drug design. , 2009, Journal of medicinal chemistry.
[58] B. Shoichet,et al. Flexible ligand docking using conformational ensembles , 1998, Protein science : a publication of the Protein Society.
[59] Alex Matter,et al. Glivec (STI571, imatinib), a rationally developed, targeted anticancer drug , 2002, Nature Reviews Drug Discovery.
[60] George A. Kaminski,et al. Force Field Validation Using Protein Side Chain Prediction , 2002 .
[61] R. Friesner,et al. Novel procedure for modeling ligand/receptor induced fit effects. , 2006, Journal of medicinal chemistry.
[62] C. Vaillancourt,et al. The 5-HT 2A serotonin receptor enhances cell viability, affects cell cycle progression and activates MEK-ERK1/2 and JAK2-STAT3 signalling pathways in human choriocarcinoma cell lines. , 2010, Placenta.
[63] Gerhard Klebe,et al. Ligand-supported homology modeling of g-protein-coupled receptor sites: models sufficient for successful virtual screening. , 2004, Angewandte Chemie.
[64] Ian T. Crosby,et al. Homology Modeling and Docking Evaluation of Aminergic G Protein-Coupled Receptors , 2010, J. Chem. Inf. Model..
[65] I. Sora,et al. Depletion of serotonin and selective inhibition of 2B receptor suppressed tumor angiogenesis by inhibiting endothelial nitric oxide synthase and extracellular signal-regulated kinase 1/2 phosphorylation. , 2009, Neoplasia.
[66] P. Salmi,et al. Evidence for functional interactions between 5-HT1A and 5-HT2A receptors in rat thermoregulatory mechanisms. , 1998, Pharmacology & toxicology.
[67] L. Wodicka,et al. A small molecule–kinase interaction map for clinical kinase inhibitors , 2005, Nature Biotechnology.
[68] M. Rashid,et al. Functions of 5-HT2A receptor and its antagonists in the cardiovascular system. , 2004, Pharmacology & therapeutics.
[69] P. Cowen,et al. Slow wave sleep in humans: Role of 5-HT2A and 5-HT2C receptors , 1994, Neuropharmacology.
[70] R. Glennon,et al. Application of ligand SAR, receptor modeling and receptor mutagenesis to the discovery and development of a new class of 5-HT(2A) ligands. , 2002, Current topics in medicinal chemistry.
[71] B. Honig,et al. A hierarchical approach to all‐atom protein loop prediction , 2004, Proteins.
[72] Xueliang Fang,et al. Molecular modeling of the three-dimensional structure of dopamine 3 (D3) subtype receptor: discovery of novel and potent D3 ligands through a hybrid pharmacophore- and structure-based database searching approach. , 2003, Journal of medicinal chemistry.
[73] P. Wild,et al. Serotonin promotes tumor growth in human hepatocellular cancer , 2010, Hepatology.
[74] H Weinstein,et al. Mapping the Binding Site Pocket of the Serotonin 5-Hydroxytryptamine2A Receptor , 1996, The Journal of Biological Chemistry.