Statistical shape model of atria, ventricles and epicardium from short- and long-axis MR images

We describe a new 3-D statistical shape model of the heart consisting of atria, ventricles and epicardium. The model was constructed by combining information on standard short- and long-axis cardiac MR images. In the model, the variability of the shape was modeled with PCA- and ICA-based shape models as well as with non-parametric landmark probability distributions and a probabilistic atlas. The statistical atlas was built from 25 healthy subjects. The shape model was evaluated by applying it to image segmentation. The probabilistic atlas was found to be superior to the other shape models (P < 0.001) in this study.

[1]  David Atkinson,et al.  A study of the motion and deformation of the heart due to respiration , 2002, IEEE Transactions on Medical Imaging.

[2]  Daniel Rueckert,et al.  A Dynamic Brain Atlas , 2002, MICCAI.

[3]  Timothy F. Cootes,et al.  Active Appearance Models , 2001, IEEE Trans. Pattern Anal. Mach. Intell..

[4]  Jyrki Lötjönen,et al.  Elastic Matching Using a Deformation Sphere , 2001, MICCAI.

[5]  V. Poutanen,et al.  Right atrial MR imaging studies of cadaveric atrial casts and comparison with right and left atrial volumes and function in healthy subjects. , 1994, Radiology.

[6]  Richard O. Duda,et al.  Pattern classification and scene analysis , 1974, A Wiley-Interscience publication.

[7]  Alejandro F. Frangi,et al.  Automatic construction of multiple-object three-dimensional shape models: Application to cardiac modeling , 2002 .

[8]  Daniel Rueckert,et al.  Segmentation of 4D Cardiac MR Images Using a Probabilistic Atlas and the EM Algorithm , 2003, MICCAI.

[9]  Jean Meunier,et al.  Average Brain Models: A Convergence Study , 2000, Comput. Vis. Image Underst..

[10]  Terry M. Peters,et al.  A High Resolution Dynamic Heart Model Based on Averaged MRI Data , 2003, MICCAI.

[11]  Jayaram K. Udupa,et al.  Shape-based interpolation of multidimensional grey-level images , 1994, Medical Imaging.

[12]  Christopher J. Taylor,et al.  Building 3D sulcal models using local geometry , 2001, Medical Image Anal..

[13]  Juha Koikkalainen,et al.  Image segmentation with the combination of the PCA- and ICA-based modes of shape variation , 2004, 2004 2nd IEEE International Symposium on Biomedical Imaging: Nano to Macro (IEEE Cat No. 04EX821).

[14]  E. Oja,et al.  Independent Component Analysis , 2013 .

[15]  Milan Sonka,et al.  Multi-view active appearance models for consistent segmentation of multiple standard views: application to long and short-axis cardiac MR images , 2003, CARS.

[16]  Jyrki Lötjönen,et al.  Correction of Movement Artifacts from 4-D Cardiac Short and Long-Axis MR Data , 2004, MICCAI.

[17]  Takeo Kanade,et al.  3-D Deformable Registration of Medical Images Using a Statistical Atlas , 1999, MICCAI.

[18]  Milan Sonka,et al.  3-D active appearance models: segmentation of cardiac MR and ultrasound images , 2002, IEEE Transactions on Medical Imaging.

[19]  Jyrki Lötjönen Construction of patient-specific surface models from MR images: application to bioelectromagnetism , 2003, Comput. Methods Programs Biomed..

[20]  Timothy F. Cootes,et al.  Active Shape Models-Their Training and Application , 1995, Comput. Vis. Image Underst..

[21]  V. Poutanen,et al.  Assessment of left atrial volumes and phasic function using cine magnetic resonance imaging in normal subjects. , 1994, The American journal of cardiology.

[22]  Alejandro F. Frangi,et al.  ICA vs. PCA Active Appearance Models: Application to Cardiac MR Segmentation , 2003, MICCAI.

[23]  Alejandro F. Frangi,et al.  Automatic Construction of 3D Statistical Deformation Models Using Non-rigid Registration , 2001, MICCAI.

[24]  Colin Studholme,et al.  An overlap invariant entropy measure of 3D medical image alignment , 1999, Pattern Recognit..

[25]  Jyrki Lötjönen,et al.  Tracking Atria and Ventricles Simultaneously from Cardiac Short- and Long-Axis MR Images , 2003, MICCAI.

[26]  Alejandro F. Frangi,et al.  Three-dimensional modeling for functional analysis of cardiac images, a review , 2001, IEEE Transactions on Medical Imaging.

[27]  S. Plein,et al.  Normal human left and right ventricular dimensions for MRI as assessed by turbo gradient echo and steady‐state free precession imaging sequences , 2003, Journal of magnetic resonance imaging : JMRI.

[28]  Paul M. Thompson,et al.  Detection, visualization and animation of abnormal anatomic structure with a deformable probabilistic brain atlas based on random vector field transformations , 1997, Medical Image Anal..

[29]  Benoit M. Dawant,et al.  The adaptive bases algorithm for intensity-based nonrigid image registration , 2003, IEEE Transactions on Medical Imaging.

[30]  Alejandro F Frangi,et al.  Automatic construction of 3-D statistical deformation models of the brain using nonrigid registration , 2003, IEEE Transactions on Medical Imaging.

[31]  Koenraad Van Leemput,et al.  Automated model-based tissue classification of MR images of the brain , 1999, IEEE Transactions on Medical Imaging.