Theoretical hydrogen bonding parameters for drug design.

Hydrogen bonding interactions play a major role in many chemical and biological processes. This article describes the development of a method for the quantitative estimation of the hydrogen-bonding donor strengths of OH/NH moieties and of the hydrogen bonding acceptor strengths of O/N atoms in different chemical structures. The method is based on the correlation of experimentally observed hydrogen-bonding strengths with quantum-mechanical derived properties, calculated on the acceptor atom (for hydrogen-bond acceptors) and on the heavy atom attached to the donor hydrogen (for hydrogen-bond donors). The properties giving the best correlation with the experimental hydrogen bonding scales were electrophilic superdelocalizability and self-atom polarizability. The best equations found have been implemented in a Web-based tool for hydrogen-bond strength prediction.

[1]  J. Gasteiger,et al.  FROM ATOMS AND BONDS TO THREE-DIMENSIONAL ATOMIC COORDINATES : AUTOMATIC MODEL BUILDERS , 1993 .

[2]  P Ertl,et al.  World Wide Web-based system for the calculation of substituent parameters and substituent similarity searches. , 1998, Journal of molecular graphics & modelling.

[3]  David Weininger,et al.  SMILES, a chemical language and information system. 1. Introduction to methodology and encoding rules , 1988, J. Chem. Inf. Comput. Sci..

[4]  George R. Famini,et al.  Using theoretical descriptors in quantitative structure-activity relationships: some toxicological indices. , 1991, Journal of medicinal chemistry.

[5]  Peter Ertl,et al.  WWW-based chemical information system , 1997 .

[6]  Taravat Ghafourian,et al.  Hydrogen Bonding Parameters for QSAR: Comparison of Indicator Variables, Hydrogen Bond Counts, Molecular Orbital and Other Parameters , 1999, J. Chem. Inf. Comput. Sci..

[7]  M. Charton,et al.  The structural dependence of amino acid hydrophobicity parameters. , 1982, Journal of theoretical biology.

[8]  E. D. Isaacs,et al.  Covalency of the Hydrogen Bond in Ice: A Direct X-Ray Measurement , 1999 .

[9]  Eamonn F. Healy,et al.  Development and use of quantum mechanical molecular models. 76. AM1: a new general purpose quantum mechanical molecular model , 1985 .

[10]  J. Murray,et al.  Correlations between the solvent hydrogen-bond-donating parameter .alpha. and the calculated molecular surface electrostatic potential , 1991 .

[11]  Kenichi Fukui,et al.  Theory of Substitution in Conjugated Molecules , 1954 .

[12]  O. Raevsky,et al.  QSAR H-bonding descriptions , 1993 .

[13]  Michael H. Abraham,et al.  Hydrogen bonding. Part 9. Solute proton donor and proton acceptor scales for use in drug design , 1989 .

[14]  Quantitative Structure-Activity Studies. I. Parameters relating to Hydrophobicity , 1975 .

[15]  G.R. Famini,et al.  Using theoretical descriptors in quantitative structure activity relationships , 1989, Images of the Twenty-First Century. Proceedings of the Annual International Engineering in Medicine and Biology Society,.

[16]  T. Fujita,et al.  Hydrogen-bonding parameter and its significance in quantitative structure--activity studies. , 1977, Journal of medicinal chemistry.

[17]  J. Stewart Optimization of parameters for semiempirical methods I. Method , 1989 .