Structural properties of genotype–phenotype maps
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[1] Naturforschender Verein in Brünn.,et al. Verhandlungen des naturforschenden Vereines in Brünn. , 1876 .
[2] N. Pierce. Origin of Species , 1914, Nature.
[3] R. Fisher. XV.—The Correlation between Relatives on the Supposition of Mendelian Inheritance. , 1919, Transactions of the Royal Society of Edinburgh.
[4] W. E. Ritter. AS TO THE CAUSES OF EVOLUTION. , 1923, Science.
[5] J. Haldane,et al. The Causes of Evolution , 1933 .
[6] M. Kimura. Evolutionary Rate at the Molecular Level , 1968, Nature.
[7] FRANK B. SALISBURY,et al. Natural Selection and the Complexity of the Gene , 1969, Nature.
[8] John Maynard Smith,et al. Natural Selection and the Concept of a Protein Space , 1970, Nature.
[9] J. Crow. The genetic basis of evolutionary change , 1975 .
[10] K. Dill. Theory for the folding and stability of globular proteins. , 1985, Biochemistry.
[11] K. Dill,et al. A lattice statistical mechanics model of the conformational and sequence spaces of proteins , 1989 .
[12] D. Lipman,et al. Modelling neutral and selective evolution of protein folding , 1991, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[13] Yoh Iwasa,et al. Free fitness that always increases in evolution. , 1988, Journal of theoretical biology.
[14] P. Schuster,et al. From sequences to shapes and back: a case study in RNA secondary structures , 1994, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[15] N. Wingreen,et al. Emergence of Preferred Structures in a Simple Model of Protein Folding , 1996, Science.
[16] R. Schaller,et al. Moore's law: past, present and future , 1997 .
[17] Dorothea Heiss-Czedik,et al. An Introduction to Genetic Algorithms. , 1997, Artificial Life.
[18] M. Karplus,et al. Protein Folding: A Perspective from Theory and Experiment , 1998 .
[19] Duncan J. Watts,et al. Collective dynamics of ‘small-world’ networks , 1998, Nature.
[20] Albert,et al. Emergence of scaling in random networks , 1999, Science.
[21] Amos Bairoch,et al. The ENZYME database in 2000 , 2000, Nucleic Acids Res..
[22] Ivo L. Hofacker,et al. Vienna RNA secondary structure server , 2003, Nucleic Acids Res..
[23] David L. Wheeler,et al. GenBank , 2015, Nucleic Acids Res..
[24] Sarah A. Teichmann,et al. 3D Complex: A Structural Classification of Protein Complexes , 2006, PLoS Comput. Biol..
[25] P. Schuster. Prediction of RNA secondary structures: from theory to models and real molecules , 2006 .
[26] Andreas Wagner,et al. Robustness Can Evolve Gradually in Complex Regulatory Gene Networks with Varying Topology , 2007, PLoS Comput. Biol..
[27] A. Wagner. Robustness and evolvability: a paradox resolved , 2008, Proceedings of the Royal Society B: Biological Sciences.
[28] A. Wagner,et al. Innovation and robustness in complex regulatory gene networks , 2007, Proceedings of the National Academy of Sciences.
[29] Richard A Goldstein,et al. The structure of protein evolution and the evolution of protein structure. , 2008, Current opinion in structural biology.
[30] Eric L. Miller,et al. The Ascent of the Abundant: How Mutational Networks Constrain Evolution , 2008, PLoS Comput. Biol..
[31] Elhanan Borenstein,et al. An End to Endless Forms: Epistasis, Phenotype Distribution Bias, and Nonuniform Evolution , 2008, PLoS Comput. Biol..
[32] Venky N. Iyer,et al. Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation , 2008, PLoS genetics.
[33] Andreas Wagner,et al. Neutral network sizes of biological RNA molecules can be computed and are not atypically small , 2008, BMC Bioinformatics.
[34] Andreas Wagner,et al. Evolutionary Plasticity and Innovations in Complex Metabolic Reaction Networks , 2009, PLoS Comput. Biol..
[35] Daniel E. Newburger,et al. Diversity and Complexity in DNA Recognition by Transcription Factors , 2009, Science.
[36] A. Wagner,et al. Evolutionary Innovations and the Organization of Protein Functions in Genotype Space , 2010, PloS one.
[37] Timothy R Hughes,et al. Conserved expression without conserved regulatory sequence: the more things change, the more they stay the same. , 2010, Trends in genetics : TIG.
[38] J. Doye,et al. Self-assembly, modularity, and physical complexity. , 2009, Physical review. E, Statistical, nonlinear, and soft matter physics.
[39] Jeffrey D Orth,et al. What is flux balance analysis? , 2010, Nature Biotechnology.
[40] Mark Newman,et al. Networks: An Introduction , 2010 .
[41] A. Wagner,et al. Evolvability and robustness in a complex signalling circuit. , 2011, Molecular bioSystems.
[42] Javier M. Buldú,et al. Correction: Topological Structure of the Space of Phenotypes: The Case of RNA Neutral Networks , 2011, PLoS ONE.
[43] Sebastian E Ahnert,et al. Evolutionary dynamics in a simple model of self-assembly. , 2011, Physical review. E, Statistical, nonlinear, and soft matter physics.
[44] Andreas Wagner,et al. A comparison of genotype-phenotype maps for RNA and proteins. , 2012, Biophysical journal.
[45] Joshua L. Payne,et al. Constraint and Contingency in Multifunctional Gene Regulatory Circuits , 2013, PLoS Comput. Biol..
[46] Helmut Schiessel,et al. Exact enumeration of Hamiltonian walks on the 4 × 4 × 4 cube and applications to protein folding , 2013 .
[47] Susanna Manrubia,et al. toyLIFE: a computational framework to study the multi-level organisation of the genotype-phenotype map , 2014, Scientific Reports.
[48] Joshua L. Payne,et al. The Robustness and Evolvability of Transcription Factor Binding Sites , 2014, Science.
[49] Jason H. Moore,et al. Robustness, Evolvability, and the Logic of Genetic Regulation , 2014, Artificial Life.
[50] Joshua L. Payne,et al. Latent phenotypes pervade gene regulatory circuits , 2014, BMC Systems Biology.
[51] Iain G. Johnston,et al. A tractable genotype–phenotype map modelling the self-assembly of protein quaternary structure , 2014, Journal of The Royal Society Interface.
[52] Ard A. Louis,et al. The Arrival of the Frequent: How Bias in Genotype-Phenotype Maps Can Steer Populations to Local Optima , 2014, PloS one.
[53] E. Ibáñez-Marcelo,et al. The topology of robustness and evolvability in evolutionary systems with genotype-phenotype map. , 2014, Journal of theoretical biology.
[54] S. Ahnert,et al. The organization of biological sequences into constrained and unconstrained parts determines fundamental properties of genotype–phenotype maps , 2015, Journal of The Royal Society Interface.
[55] Joshua L. Payne,et al. Function does not follow form in gene regulatory circuits , 2015, Scientific Reports.
[56] S. Teichmann,et al. Principles of assembly reveal a periodic table of protein complexes , 2015, Science.
[57] Kamaludin Dingle,et al. The structure of the genotype–phenotype map strongly constrains the evolution of non-coding RNA , 2015, Interface Focus.
[58] Sebastian E. Ahnert,et al. Genetic Correlations Greatly Increase Mutational Robustness and Can Both Reduce and Enhance Evolvability , 2015, PLoS Comput. Biol..
[59] L. Penrose,et al. THE CORRELATION BETWEEN RELATIVES ON THE SUPPOSITION OF MENDELIAN INHERITANCE , 2022 .