Nested genes and increasing organizational complexity of metazoan genomes.

[1]  David Haussler,et al.  The UCSC Genome Browser database: update 2010 , 2009, Nucleic Acids Res..

[2]  Melanie A. Huntley,et al.  Evolution of genes and genomes on the Drosophila phylogeny , 2007, Nature.

[3]  E. Koonin,et al.  Patterns of intron gain and conservation in eukaryotic genes , 2007, BMC Evolutionary Biology.

[4]  William Stafford Noble,et al.  Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project , 2007, Nature.

[5]  J. Dow,et al.  Using FlyAtlas to identify better Drosophila melanogaster models of human disease , 2007, Nature Genetics.

[6]  Kazuho Ikeo,et al.  Transcriptional Interferences in cis Natural Antisense Transcripts of Humans and Mice , 2007, Genetics.

[7]  T. Gingeras,et al.  Genome-wide transcription and the implications for genomic organization , 2007, Nature Reviews Genetics.

[8]  M. Lynch.  The frailty of adaptive hypotheses for the origins of organismal complexity , 2007, Proceedings of the National Academy of Sciences.

[9]  Ramiro Barrantes-Reynolds,et al.  Metalloproteinase-2 Ddc8 and Its Host Gene Tissue Inhibitor of Potential Regulatory Relationship between the Nested Gene , 2006 .

[10]  Tatiana Tatusova,et al.  NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins , 2004, Nucleic Acids Res..

[11]  Michael Lynch,et al.  The Origins of Genome Architecture , 2007 .

[12]  S. Yi.  Non-adaptive evolution of genome complexity. , 2006, BioEssays : news and reviews in molecular, cellular and developmental biology.

[13]  C. Rivetti,et al.  Collision events between RNA polymerases in convergent transcription studied by atomic force microscopy , 2006, Nucleic acids research.

[14]  M. Lynch.  The origins of eukaryotic gene structure. , 2006, Molecular biology and evolution.

[15]  G. Helt,et al.  Transcriptional landscape of the human and fly genomes: nonlinear and multifunctional modular model of transcriptomes. , 2006, Cold Spring Harbor symposia on quantitative biology.

[16]  Dalong Ma,et al.  Nested genes in the human genome. , 2005, Genomics.

[17]  J. Mattick,et al.  Small regulatory RNAs in mammals. , 2005, Human molecular genetics.

[18]  Izabela Makalowska,et al.  Overlapping genes in vertebrate genomes , 2005, Comput. Biol. Chem..

[19]  Tatiana A. Tatusova,et al.  NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins , 2004, Nucleic Acids Res..

[20]  L. Wilkinson,et al.  Expression patterns of the novel imprinted genes Nap1l5 and Peg13 and their non-imprinted host genes in the adult mouse brain. , 2004, Gene expression patterns : GEP.

[21]  S. Batalov,et al.  A gene atlas of the mouse and human protein-encoding transcriptomes. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[22]  Michal Galdzicki,et al.  Mammalian overlapping genes: the comparative perspective. , 2004, Genome research.

[23]  Sudhir Kumar,et al.  Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks. , 2003, Molecular biology and evolution.

[24]  M. Lynch,et al.  The Origins of Genome Complexity , 2003, Science.

[25]  R. Durbin,et al.  The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics , 2003, PLoS biology.

[26]  M. Cariou,et al.  A Nested Alpha-Amylase Gene in Drosophila ananassae , 2003, Journal of Molecular Evolution.

[27]  Michael Ashburner,et al.  Annotation of the Drosophila melanogaster euchromatic genome: a systematic review , 2002, Genome Biology.

[28]  Aleksey Y. Ogurtsov,et al.  OWEN: aligning long collinear regions of genomes , 2002, Bioinform..

[29]  M. Lynch.  Intron evolution as a population-genetic process , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[30]  W. J. Kent,et al.  BLAT--the BLAST-like alignment tool. , 2002, Genome research.

[31]  M. Gelfand,et al.  Frequent alternative splicing of human genes. , 1999, Genome research.

[32]  N. M. Brooke,et al.  A molecular timescale for vertebrate evolution , 1998, Nature.

[33]  J. Gulcher,et al.  The OMgp gene, a second growth suppressor within the NF1 gene , 1998, Oncogene.

[34]  Gapped BLAST and PSI-BLAST: A new , 1997 .

[35]  M. Furia,et al.  Dense cluster of genes is located at the ecdysone-regulated 3C puff of Drosophila melanogaster. , 1993, Journal of molecular biology.

[36]  S. Henikoff,et al.  Conserved arrangement of nested genes at the Drosophila Gart locus. , 1987, Genetics.