Single Proteoliposomes with E.coli Quinol Oxidase : Proton Pumping without Transmembrane Leaks

Respiratory oxidases are transmembrane enzymes that catalyze the reduction of dioxygen to water in the final step of aerobic respiration. This process is linked to proton pumping across the membrane. Here, we developed a method to study the catalytic turnover of the quinol oxidase, cytochrome bo3 from E. coli at single-molecule level. Liposomes with reconstituted cytochrome bo3 were loaded with a pH-sensitive dye and changes in the dye fluorescence, associated with proton transfer and pumping, were monitored as a function of time. The single-molecule approach allowed us to determine the orientation of cytochrome bo3 in the membrane; in ?70 % of the protein-containing liposomes protons were released to the outside. Upon addition of substrate we observed the buildup of a ?pH (in the presence of the K+ ionophore valinomycin), which was stable over at least ?800 s. No rapid changes in ?pH (proton leaks) were observed during steady state proton pumping, which indicates that the free energy stored in the electrochemical gradient in E. coli is not dissipated or regulated through stochastic transmembrane proton leaks, as suggested from an earlier study (Li et al. J. Am. Chem. Soc. (2015) 137, 16055–16063).

[1]  R. Tuma,et al.  Single Enzyme Experiments Reveal a Long-Lifetime Proton Leak State in a Heme-Copper Oxidase , 2015, Journal of the American Chemical Society.

[2]  R. Gennis,et al.  Mutation of a single residue in the ba3 oxidase specifically impairs protonation of the pump site , 2015, Proceedings of the National Academy of Sciences.

[3]  V. Zhdanov,et al.  Hydrolysis of a lipid membrane by single enzyme molecules: accurate determination of kinetic parameters. , 2015, Angewandte Chemie.

[4]  P. Brzezinski,et al.  SNARE-fusion mediated insertion of membrane proteins into native and artificial membranes , 2014, Nature Communications.

[5]  M. Blomberg,et al.  Proton pumping in cytochrome c oxidase: energetic requirements and the role of two proton channels. , 2014, Biochimica et biophysica acta.

[6]  P. Rich,et al.  Functions of the hydrophilic channels in protonmotive cytochrome c oxidase , 2013, Journal of The Royal Society Interface.

[7]  C. Hiser,et al.  Gating and regulation of the cytochrome c oxidase proton pump. , 2012, Biochimica et biophysica acta.

[8]  A. Konstantinov Cytochrome c oxidase: Intermediates of the catalytic cycle and their energy‐coupled interconversion , 2012, FEBS letters.

[9]  Ville R. I. Kaila,et al.  Proton-coupled electron transfer in cytochrome oxidase. , 2010, Chemical reviews.

[10]  A. Stuchebrukhov,et al.  Similarity of cytochrome c oxidases in different organisms , 2010, Proteins.

[11]  A. Johansson,et al.  Variable proton-pumping stoichiometry in structural variants of cytochrome c oxidase. , 2010, Biochimica et biophysica acta.

[12]  P. Brzezinski,et al.  Internal charge transfer in cytochrome c oxidase at a limited proton supply: proton pumping ceases at high pH. , 2009, Biochimica et biophysica acta.

[13]  B. Ludwig,et al.  Electron transfer and energy transduction in the terminal part of the respiratory chain - lessons from bacterial model systems. , 2009, Biochimica et biophysica acta.

[14]  E. Disalvo,et al.  Structural and dynamical surface properties of phosphatidylethanolamine containing membranes. , 2009, Biochimica et biophysica acta.

[15]  Yafei Huang,et al.  Vectorial proton transfer coupled to reduction of O2 and NO by a heme-copper oxidase , 2008, Proceedings of the National Academy of Sciences.

[16]  R. Gennis,et al.  Cytochrome c oxidase: exciting progress and remaining mysteries , 2008, Journal of bioenergetics and biomembranes.

[17]  I. Belevich,et al.  Molecular mechanism of proton translocation by cytochrome c oxidase. , 2008, Antioxidants & redox signaling.

[18]  M. Wikström,et al.  Mechanism and energetics of proton translocation by the respiratory heme-copper oxidases. , 2007, Biochimica et biophysica acta.

[19]  C. Rienstra,et al.  Magic-angle spinning solid-state NMR of a 144 kDa membrane protein complex: E. coli cytochrome bo3 oxidase , 2006, Journal of biomolecular NMR.

[20]  S. Yoshikawa,et al.  Proton pumping mechanism of bovine heart cytochrome c oxidase. , 2006, Biochimica et biophysica acta.

[21]  P. Brzezinski,et al.  Design principles of proton-pumping haem-copper oxidases. , 2006, Current opinion in structural biology.

[22]  S. Ferguson-Miller,et al.  Energy transduction: proton transfer through the respiratory complexes. , 2006, Annual review of biochemistry.

[23]  P. Brzezinski,et al.  The timing of proton migration in membrane-reconstituted cytochrome c oxidase. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[24]  P. Brzezinski,et al.  Structural elements involved in electron‐coupled proton transfer in cytochrome c oxidase , 2004, FEBS letters.

[25]  Bernhard Kadenbach,et al.  Intrinsic and extrinsic uncoupling of oxidative phosphorylation. , 2003, Biochimica et biophysica acta.

[26]  R. Gennis,et al.  A Mutation in Subunit I of Cytochrome Oxidase from Rhodobacter sphaeroides Results in an Increase in Steady-State Activity but Completely Eliminates Proton Pumping† , 2002 .

[27]  Nathan Nelson,et al.  The significance of molecular slips in transport systems , 2002, Nature Reviews Molecular Cell Biology.

[28]  A. Puustinen,et al.  The structure of the ubiquinol oxidase from Escherichia coli and its ubiquinone binding site , 2000, Nature Structural Biology.

[29]  K. Edwards,et al.  Incorporation of bacterial membrane proteins into liposomes: factors influencing protein reconstitution. , 1999, Biochimica et biophysica acta.

[30]  A. Puustinen,et al.  Glutamic acid 286 in subunit I of cytochrome bo3 is involved in proton translocation. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[31]  R. Gennis,et al.  One-step purification of histidine-tagged cytochrome bo3 from Escherichia coli and demonstration that associated quinone is not required for the structural integrity of the oxidase. , 1997, Biochimica et biophysica acta.

[32]  P. Brzezinski,et al.  Oxidation of ubiquinol by cytochrome bo3 from Escherichia coli: kinetics of electron and proton transfer. , 1997, Biochemistry.

[33]  A. Driessen,et al.  Ion permeability of the cytoplasmic membrane limits the maximum growth temperature of bacteria and archaea , 1995, Molecular microbiology.

[34]  M. Wikström,et al.  pH dependence of proton translocation by Escherichia coli. , 1992, The Journal of biological chemistry.

[35]  P. Brzezinski A reaction cycle for cytochrome c oxidase as an electron-transport-driven proton pump: The effect of electrochemical potential and slips , 1990 .

[36]  D. Blair,et al.  Redox-linked proton translocation in cytochrome oxidase: the importance of gating electron flow. The effects of slip in a model transducer. , 1986, Biophysical journal.

[37]  B. Malmström Cytochrome c oxide as a proton pump. A transition-state mechanism , 1985 .

[38]  D. Engelman,et al.  Lipid bilayer thickness varies linearly with acyl chain length in fluid phosphatidylcholine vesicles. , 1983, Journal of molecular biology.

[39]  C. Slayman,et al.  Quantitative measurements of membrane potential in Escherichia coli. , 1980, Biochemistry.

[40]  W. Kern Cleaning solutions based on hydrogen peroxide for use in silicon semiconductor technology , 1970 .