Feasibility of Automatic Seed Generation Applied to Cardiac MRI Image Analysis

We present a method of using interactive image segmentation algorithms to reduce specific image segmentation problems to the task of finding small sets of pixels identifying the regions of interest. To this end, we empirically show the feasibility of automatically generating seeds for GrowCut, a popular interactive image segmentation algorithm. The principal contribution of our paper is the proposal of a method for automating the seed generation method for the task of whole-heart segmentation of MRI scans, which achieves competitive unsupervised results (0.76 Dice on the MMWHS dataset). Moreover, we show that segmentation performance is robust to seeds with imperfect precision, suggesting that GrowCut-like algorithms can be applied to medical imaging tasks with little modeling effort.

[1]  Rolf Adams,et al.  Seeded Region Growing , 1994, IEEE Trans. Pattern Anal. Mach. Intell..

[2]  Andreas Dengel,et al.  EuroSAT: A Novel Dataset and Deep Learning Benchmark for Land Use and Land Cover Classification , 2017, IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensing.

[3]  Peter M. Atkinson,et al.  Scale Sequence Joint Deep Learning (SS-JDL) for land use and land cover classification , 2020, Remote Sensing of Environment.

[4]  Giovanni Maria Farinella,et al.  EgoCart: A Benchmark Dataset for Large-Scale Indoor Image-Based Localization in Retail Stores , 2021, IEEE Transactions on Circuits and Systems for Video Technology.

[5]  J. Durlak How to select, calculate, and interpret effect sizes. , 2009, Journal of pediatric psychology.

[6]  Hanqing Lu,et al.  Contextual deconvolution network for semantic segmentation , 2020, Pattern Recognit..

[7]  Ahmed Hosny,et al.  Artificial intelligence in radiology , 2018, Nature Reviews Cancer.

[8]  John D. Austin,et al.  Adaptive histogram equalization and its variations , 1987 .

[9]  Carlos Gershenson,et al.  Deliberative Self-Organizing Traffic Lights with Elementary Cellular Automata , 2017, Complex..

[10]  Xin Yang,et al.  Deep Learning Techniques for Automatic MRI Cardiac Multi-Structures Segmentation and Diagnosis: Is the Problem Solved? , 2018, IEEE Transactions on Medical Imaging.

[11]  Eisuke Kita,et al.  Structural design using cellular automata , 2000 .

[12]  Andrew Mehnert,et al.  An improved seeded region growing algorithm , 1997, Pattern Recognit. Lett..

[13]  Laura Diosan,et al.  Butterfly Effect in Chaotic Image Segmentation , 2020, Entropy.

[14]  Musbah J. Aqel,et al.  Survey on Image Segmentation Techniques , 2015 .

[15]  Paulo Mazzoncini de Azevedo Marques,et al.  Artificial intelligence, machine learning, computer-aided diagnosis, and radiomics: advances in imaging towards to precision medicine , 2019, Radiologia brasileira.

[16]  Sotirios A. Tsaftaris,et al.  Unsupervised Myocardial Segmentation for Cardiac BOLD , 2017, IEEE Transactions on Medical Imaging.

[17]  Guang Yang,et al.  Evaluation of algorithms for Multi-Modality Whole Heart Segmentation: An open-access grand challenge , 2019, Medical Image Anal..

[18]  Umi Kalthum Ngah,et al.  Computer-Aided Segmentation System for Breast MRI Tumour using Modified Automatic Seeded Region Growing (BMRI-MASRG) , 2014, Journal of Digital Imaging.

[19]  Ahlem Melouah,et al.  Overview of automatic seed selection methods for biomedical images segmentation , 2018, Int. Arab J. Inf. Technol..

[20]  Steffen Fritz,et al.  A global dataset of crowdsourced land cover and land use reference data , 2016, Scientific Data.

[21]  Xiahai Zhuang,et al.  Multi-scale patch and multi-modality atlases for whole heart segmentation of MRI , 2016, Medical Image Anal..

[22]  Maryellen L Giger,et al.  Machine Learning in Medical Imaging. , 2018, Journal of the American College of Radiology : JACR.

[23]  Ronald M. Summers,et al.  Machine learning and radiology , 2012, Medical Image Anal..

[24]  Tushar Jaware,et al.  A novel hybrid atlas-free hierarchical graph-based segmentation of newborn brain MRI using wavelet filter banks , 2019, The International journal of neuroscience.

[25]  Marcos Martín-Fernández,et al.  Unsupervised 4D myocardium segmentation with a Markov Random Field based deformable model , 2011, Medical Image Anal..

[26]  Eliot L Siegel,et al.  Will machine learning end the viability of radiology as a thriving medical specialty? , 2019, The British journal of radiology.