No intermediate channelling in stepwise hydrolysis of fluorescein di‐β‐D‐galactoside by β‐galactosidase

For the hydrolysis of the two glycosidic bonds of fluorescein di-beta-D-galactoside (FDG) by beta-galactosidase from Escherichia coli, small [Hofmann, J. & Sernetz, M. (1983) Anal. Biochem. 131, 180-186] to dramatic [Huang, Z. (1991) Biochemistry 30, 8535-8540] deviations from simple stepwise substrate-intermediate-product kinetics have been reported. Intermediate channelling, a preferred hydrolysis of the intermediate fluorescein mono-beta-D-galactoside (FMG) formed from FDG at the active site and thus in a favourable position for further reaction, has been postulated. As there were reasons to doubt the previous findings and conclusions, the hydrolysis experiments have been repeated at initial FDG concentrations of 7-200 microM, following the concentrations of FDG, FMG and fluorescein with a reliable method, quantitative HPLC, to completion of the reaction. The transient appearance of substantial amounts of the intermediate FMG also in experiments with 200 microM FDG already rules out the existence of the most efficient intermediate channelling deduced by Huang (1991) from measurements of the initially developing fluorescence, incorrectly ascribed to fluorescein. Redetermination of the Michaelis constants for FDG and FMG led to much higher values than those reported previously. Fitting the progress curves by means of nonlinear regression combined with numerical integration of the rate equations resulted in good fits of the normal stepwise substrate-intermediate-product mechanism, without any necessity of assuming a more complex course of the reaction. So one of the rare examples of the hydrolysis of two bonds at a single enzyme-substrate encounter has been invalidated.

[1]  Boris Rotman,et al.  FLUOROGENIC SUBSTRATES FOR β-D-GALACTOSIDASES AND PHOSPHATASES DERIVED FROM FLUORESCEIN (3, 6-DIHYDROXYFLUORAN) AND ITS MONOMETHYL ETHER , 1963 .

[2]  P. Modrich,et al.  Facilitated diffusion during catalysis by EcoRI endonuclease. Nonspecific interactions in EcoRI catalysis. , 1985, The Journal of biological chemistry.

[3]  R. Geiger,et al.  [22] Separation of kinins by high-performance liquid chromatography , 1988 .

[4]  M. Sinnott,et al.  The mechanism of action of beta-galactosidase. Effect of aglycone nature and -deuterium substitution on the hydrolysis of aryl galactosides. , 1973, The Biochemical journal.

[5]  F. Fiedler,et al.  Kinetics of bond cleavages at kallidin release by tissue kallikrein: cleavage of two peptide bonds in a single enzyme-substrate complex? , 1992, Agents and actions. Supplements.

[6]  L. H. Schulman,et al.  A new method for attachment of fluorescent probes to tRNA. , 1979, Methods in enzymology.

[7]  Zhijian Huang,et al.  Kinetic fluorescence measurement of fluorescein di-beta-D-galactoside hydrolysis by beta-galactosidase: intermediate channeling in stepwise catalysis by a free single enzyme. , 1991, Biochemistry.

[8]  F. J. Reithel,et al.  Effects of Thiols on Escherichia coli β-Galactosidases , 1966, Nature.

[9]  R G Duggleby,et al.  Regression analysis of nonlinear Arrhenius plots: an empirical model and a computer program. , 1984, Computers in biology and medicine.

[10]  J. DeStefano,et al.  Human immunodeficiency virus reverse transcriptase displays a partially processive 3' to 5' endonuclease activity. , 1991, The Journal of biological chemistry.

[11]  S. Shifrin,et al.  Dissociation of β-Galactosidase by Thiols , 1970, Nature.

[12]  J. Yon,et al.  Kinetic study of the activation process of -galactosidase from Escherichia coli by Mg 2+ . , 1972, European journal of biochemistry.

[13]  E I Canela,et al.  A program for the numerical integration of enzyme kinetic equations using small computers. , 1984, International journal of bio-medical computing.

[14]  J. Garnier,et al.  pH Dependence of the Activity of β‐Galactosidase from Escherichia coli , 1971 .

[15]  Z. Huang,et al.  Kinetic assay of fluorescein mono-beta-D-galactoside hydrolysis by beta-galactosidase: a front-face measurement for strongly absorbing fluorogenic substrates. , 1991, Biochemistry.

[16]  M. Sinnott,et al.  The effect of methanol and dioxan on the rates of the beta-galactosidase-catalysed hydrolyses of some beta-D-galactrophyranosides: rate-limiting degalactosylation. The ph-dependence of galactosylation and degalactosylation. , 1973, The Biochemical journal.

[17]  H. Causton,et al.  mRNA degradation by processive 3'-5' exoribonucleases in vitro and the implications for prokaryotic mRNA decay in vivo. , 1991, Journal of molecular biology.

[18]  R. Brody,et al.  Nucleotide positions responsible for the processivity of the reaction of exonuclease I with oligodeoxyribonucleotides. , 1991, Biochemistry.

[19]  A. Mazur,et al.  Multiple attack mechanism in the porcine pancreatic alpha-amylase hydrolysis of amylose and amylopectin. , 1993, Archives of biochemistry and biophysics.

[20]  D. French,et al.  Multiple attack hypothesis of α-amylase action: Action of porcine pancreatic, human salivary, and Aspergillus oryzae α-amylases , 1967 .

[21]  C. Anfinsen,et al.  PURIFICATION, COMPOSITION, AND MOLECULAR WEIGHT OF THE BETA-GALACTOSIDASE OF ESCHERICHIA COLI K12. , 1965, The Journal of biological chemistry.

[22]  R. Tengerdy,et al.  Optical absorption and fluorescence of fluorescent protein conjugates , 1966 .

[23]  M. Sernetz,et al.  A kinetic study on the enzymatic hydrolysis of fluorescein diacetate and fluorescein-di-beta-D-galactopyranoside. , 1983, Analytical biochemistry.

[24]  J. Langowski,et al.  Does the specific recognition of DNA by the restriction endonuclease EcoRI involve a linear diffusion step? Investigation of the processivity of the EcoRI endonuclease. , 1983, Nucleic acids research.

[25]  F. Fiedler,et al.  Individual reaction steps in the release of kallidin from kininogen by tissue kallikrein. , 1986, Advances in experimental medicine and biology.