The SNPforID browser: an online tool for query and display of frequency data from the SNPforID project

The SNPforID browser is a web-based tool for the query and visualization of the SNP allele frequency data generated by the SNPforID consortium (http://www.snpforid.org/). From this project, validated panels of single nucleotide polymorphisms (SNPs) for a variety of forensic applications have been generated with the browser concentrating on the single-tube identification SNP set comprising 52 markers. A web interface allows the visitor to review the allele frequencies of the studied markers from all the available populations used by SNPforID to validate global SNP variability. The interface has been designed to offer the useful facility of combining populations into appropriate geographic groups for visual comparison of populations individually or amongst user-defined groupings and with equivalent HapMap data.

[1]  Gillian Tully,et al.  The EDNAP mitochondrial DNA population database (EMPOP) collaborative exercises: organisation, results and perspectives. , 2004, Forensic science international.

[2]  M. Feldman,et al.  Genetic Structure of Human Populations , 2002, Science.

[3]  Á. Carracedo,et al.  Nonbinary single-nucleotide polymorphism markers , 2004 .

[4]  Á. Carracedo,et al.  Inferring ancestral origin using a single multiplex assay of ancestry-informative marker SNPs. , 2007, Forensic science international. Genetics.

[5]  M. Olivier A haplotype map of the human genome. , 2003, Nature.

[6]  Á. Carracedo,et al.  Dissection of mitochondrial superhaplogroup H using coding region SNPs , 2006, Electrophoresis.

[7]  Jonathan Scott Friedlaender,et al.  A Human Genome Diversity Cell Line Panel , 2002, Science.

[8]  Á. Carracedo,et al.  A multiplex assay with 52 single nucleotide polymorphisms for human identification , 2006, Electrophoresis.

[9]  I W Evett,et al.  Inferring ethnic origin by means of an STR profile. , 2001, Forensic science international.

[10]  John M. Butler,et al.  STRBase: a short tandem repeat DNA database for the human identity testing community , 2001, Nucleic Acids Res..

[11]  Y. Itoh Progress in Forensic Genetics , 2004 .

[12]  Á. Carracedo,et al.  Introduction of an single nucleodite polymorphism‐based “Major Y‐chromosome haplogroup typing kit” suitable for predicting the geographical origin of male lineages , 2005, Electrophoresis.

[13]  Gudmundur A. Thorisson,et al.  The International HapMap Project Web site. , 2005, Genome research.

[14]  M. Olivier A haplotype map of the human genome , 2003, Nature.

[15]  V. Pascali,et al.  Online reference database of European Y-chromosomal short tandem repeat (STR) haplotypes. , 2001, Forensic science international.