RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

[1]  Li Liu,et al.  A dynamic gene expression atlas covering the entire life cycle of rice. , 2010, The Plant journal : for cell and molecular biology.

[2]  Serban Nacu,et al.  Fast and SNP-tolerant detection of complex variants and splicing in short reads , 2010, Bioinform..

[3]  T. Sakurai,et al.  Genome sequence of the palaeopolyploid soybean , 2010, Nature.

[4]  S. Cannon,et al.  Complementary genetic and genomic approaches help characterize the linkage group I seed protein QTL in soybean , 2010, BMC Plant Biology.

[5]  Rex T. Nelson,et al.  Integrating microarray analysis and the soybean genome to understand the soybeans iron deficiency response , 2009, BMC Genomics.

[6]  Michael K. Udvardi,et al.  Dissection of Symbiosis and Organ Development by Integrated Transcriptome Analysis of Lotus japonicus Mutant and Wild-Type Plants , 2009, PloS one.

[7]  Naomi S. Altman,et al.  Transcriptome of embryonic and neonatal mouse cortex by high-throughput RNA sequencing , 2009, Proceedings of the National Academy of Sciences of the United States of America.

[8]  Samuel A. Assefa,et al.  A Strand-Specific RNA–Seq Analysis of the Transcriptome of the Typhoid Bacillus Salmonella Typhi , 2009, PLoS genetics.

[9]  W. Ansorge Next-generation DNA sequencing techniques. , 2009, New biotechnology.

[10]  Brian D. Ondov,et al.  Structure and Complexity of a Bacterial Transcriptome , 2009, Journal of bacteriology.

[11]  T. Joshi,et al.  Update on Legume Transcription Factors Legume Transcription Factor Genes: What Makes Legumes So Special? , 2009 .

[12]  Naomi S. Altman,et al.  Comparison of next generation sequencing technologies for transcriptome characterization , 2009 .

[13]  Piotr J. Balwierz,et al.  Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data , 2009, Genome Biology.

[14]  Beom-Soon Choi,et al.  The lipoxygenase gene family: a genomic fossil of shared polyploidy between Glycine max and Medicago truncatula , 2008, BMC Plant Biology.

[15]  F. Denoeud,et al.  Annotating genomes with massive-scale RNA sequencing , 2008, Genome Biology.

[16]  L. Vodkin,et al.  Promoters of the soybean seed lectin homologues Le2 and Le3 regulate gene expression in vegetative tissues in Arabidopsis , 2008 .

[17]  M. Stephens,et al.  RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. , 2008, Genome research.

[18]  Marcel H. Schulz,et al.  A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome , 2008, Science.

[19]  G. Weiller,et al.  A gene expression atlas of the model legume Medicago truncatula. , 2008, The Plant journal : for cell and molecular biology.

[20]  B. Williams,et al.  Mapping and quantifying mammalian transcriptomes by RNA-Seq , 2008, Nature Methods.

[21]  M. Gerstein,et al.  The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing , 2008, Science.

[22]  R. Lister,et al.  Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis , 2008, Cell.

[23]  G. Muehlbauer,et al.  Transcriptome analysis of trichothecene-induced gene expression in barley. , 2007, Molecular plant-microbe interactions : MPMI.

[24]  J. A. Wagmaister,et al.  Using Genomics to Study Legume Seed Development1 , 2007, Plant Physiology.

[25]  Douglas G Scofield,et al.  Intron size, abundance, and distribution within untranslated regions of genes. , 2006, Molecular biology and evolution.

[26]  J. Nap,et al.  In plants, highly expressed genes are the least compact. , 2006, Trends in genetics : TIG.

[27]  S. Davis Faculty Opinions recommendation of Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. , 2006 .

[28]  Gary Stacey,et al.  Proteomic analysis of soybean root hairs after infection by Bradyrhizobium japonicum. , 2005, Molecular plant-microbe interactions : MPMI.

[29]  Stefan R. Henz,et al.  A gene expression map of Arabidopsis thaliana development , 2005, Nature Genetics.

[30]  Jessica A Schlueter,et al.  Mining EST databases to resolve evolutionary events in major crop species. , 2004, Genome.

[31]  N. Eckardt Two Genomes Are Better Than One: Widespread Paleopolyploidy in Plants and Evolutionary Effects , 2004, The Plant Cell Online.

[32]  Guillaume Blanc,et al.  Functional Divergence of Duplicated Genes Formed by Polyploidy during Arabidopsis Evolution , 2004, The Plant Cell Online.

[33]  S. Rhee,et al.  Functional Annotation of the Arabidopsis Genome Using Controlled Vocabularies1 , 2004, Plant Physiology.

[34]  E. Levanon,et al.  Human housekeeping genes are compact. , 2003, Trends in genetics : TIG.

[35]  James E. Specht,et al.  The Seed Protein, Oil, and Yield QTL on Soybean Linkage Group I , 2003 .

[36]  Xuhua Xia,et al.  Effects of GC Content and Mutational Pressure on the Lengths of Exons and Coding Sequences , 2003, Journal of Molecular Evolution.

[37]  J. A. Buso,et al.  BMC Plant Biology , 2003 .

[38]  E. Koonin,et al.  Selection in the evolution of gene duplications , 2002, Genome Biology.

[39]  W. Fehr,et al.  Processing of lipoxygenase-free soybeans and evaluation in foods , 2001 .

[40]  M. Lynch,et al.  The evolutionary fate and consequences of duplicate genes. , 2000, Science.

[41]  John Quackenbush,et al.  The TIGR Gene Indices: reconstruction and representation of expressed gene sequences , 2000, Nucleic Acids Res..

[42]  W. Fehr,et al.  Agronomic and Seed Traits of Soybean Lines Lacking Seed Lipoxygenases , 1998 .

[43]  Thomas L. Madden,et al.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.

[44]  R. Shoemaker,et al.  Genome duplication in soybean (Glycine subgenus soja). , 1996, Genetics.

[45]  Y. Benjamini,et al.  Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .

[46]  K. Kitamura Genetic Improvement of Nutritional and Food Processing Quality in Soybean , 1994 .

[47]  E. Herman,et al.  Cotranslational Integration of Soybean (Glycine max) Oil Body Membrane Protein Oleosin into Microsomal Membranes , 1993, Plant physiology.

[48]  N. Nielsen,et al.  Genetic Analysis of a Null-Allele for Lipoxygenase-3 in Soybean Seeds 1 , 1983 .

[49]  R. Fisher A preliminary linkage test with Agouti and Undulated mice , 1949, Heredity.

[50]  C. Bonferroni Il calcolo delle assicurazioni su gruppi di teste , 1935 .