Investigation of smoking related features in spatio-spectral domain on resting-state fMRI data using nonnegative matrix factorization

Smoking is a typical exemplar in drug addiction researches for the wide range of tobacco users. The presented study uses functional magnetic resonance imaging (fMRI) to explore the resting-state (RS) neural mechanisms associated with smoking deprivation. We propose a novel analysis approach which applies nonnegative matrix factorization (NMF) algorithm on spatially concatenated two group datasets to investigate smoking related RS features in spatio-spectral domain. The NMF algorithm decomposed the magnitude spectra of fMRI time series into distinct frequency-specific basis functions and corresponding nonnegative spatial maps. After a two sample T-test on the z-scored spatial maps between groups, representative feature regions such as insula, anterior cingulate cortex and precuneus were found to be associated with smoking. These regions were consistent with that revealed by previous literatures studying in spatio-temporal domain. It indicates that our proposed analysis method provides another option for exploring neural mechanism differences between two groups, which might be used in a range of applications.

[1]  Chih-Jen Lin,et al.  Projected Gradient Methods for Nonnegative Matrix Factorization , 2007, Neural Computation.

[2]  Danielle S. Bassett,et al.  A validated network of effective amygdala connectivity , 2007, NeuroImage.

[3]  Cynthia G. Wible,et al.  Investigation of spectrally coherent resting‐state networks using non‐negative matrix factorization for functional MRI data , 2011, Int. J. Imaging Syst. Technol..

[4]  H. Sebastian Seung,et al.  Learning the parts of objects by non-negative matrix factorization , 1999, Nature.

[5]  Stephen M. Smith,et al.  Investigations into resting-state connectivity using independent component analysis , 2005, Philosophical Transactions of the Royal Society B: Biological Sciences.

[6]  H. Gu,et al.  Association of nicotine addiction and nicotine's actions with separate cingulate cortex functional circuits. , 2009, Archives of general psychiatry.

[7]  Heung-Il Suk,et al.  A Novel Bayesian Framework for Discriminative Feature Extraction in Brain-Computer Interfaces , 2013, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[8]  Jong-Hwan Lee,et al.  A constrained alternating least squares nonnegative matrix factorization algorithm enhances task-related neuronal activity detection from single subject's fMRI data , 2011, 2011 International Conference on Machine Learning and Cybernetics.

[9]  L. Kozlowski,et al.  The Fagerström Test for Nicotine Dependence: a revision of the Fagerström Tolerance Questionnaire. , 1991, British journal of addiction.

[10]  Vince D. Calhoun,et al.  Group learning using contrast NMF : Application to functional and structural MRI of schizophrenia , 2008, 2008 IEEE International Symposium on Circuits and Systems.

[11]  Elliot A. Stein,et al.  Resting state functional connectivity in addiction: Lessons learned and a road ahead , 2012, NeuroImage.

[12]  Dick J Veltman,et al.  Brain activation patterns associated with cue reactivity and craving in abstinent problem gamblers, heavy smokers and healthy controls: an fMRI study , 2010, Addiction biology.

[13]  Gabriele Lohmann,et al.  Using non-negative matrix factorization for single-trial analysis of fMRI data , 2007, NeuroImage.

[14]  Paul M. Matthews,et al.  Nicotine replacement in abstinent smokers improves cognitive withdrawal symptoms with modulation of resting brain network dynamics , 2010, NeuroImage.

[15]  Erkki Oja,et al.  Independent component analysis: algorithms and applications , 2000, Neural Networks.