AN OBLIQUE-INCIDENCE REFLECTIVITY DIFFERENCE STUDY OF THE DEPENDENCE OF PROBE-TARGET REACTION CONSTANTS ON SURFACE TARGET DENSITY USING STREPTAVIDIN-BIOTIN REACTIONS AS A MODEL

A combination of the microarray platform and oblique-incidence reflectivity difference (OI-RD) microscopy was used to study the dependence of kinetic constants of probe-target reactions on the surface density of immobilized targets. Streptavidin-biotin reactions with a very high binding affinity were employed as the study model. Oblique-incidence reflectivity difference microscopy, a label-free and surface-based detection technique, was developed for monitoring real-time binding curves between two interactive biomolecules, enabling the acquisition of kinetic constants such as on-rate, off-rate, and equilibrium dissociation constants. These kinetic constants are important in characterizing biomolecular interactions because in living cells all intercellular and intermolecular reactions are at dynamic rather than at stable equilibrium. The kinetic constant of streptavidin binding to surface-immobilized biotin-bovine serum albumin was demonstrated to be significantly affected by the density of surface bovine serum albumin conjugates, mainly due to mass-transport effects within targets.

[1]  J. Broecker,et al.  Quantifying high-affinity binding of hydrophobic ligands by isothermal titration calorimetry. , 2012, Analytical chemistry.

[2]  S. L. Bud'ko,et al.  Anomalous temperature-dependent transport in YbNi2B2C and its correlation to microstructural features , 2004 .

[3]  G. Másson,et al.  Determination of active concentrations and association and dissociation rate constants of interacting biomolecules: an analytical solution to the theory for kinetic and mass transport limitations in biosensor technology and its experimental verification. , 2002, Biochemistry.

[4]  P. Hemker,et al.  Label-free assessment of high-affinity antibody-antigen binding constants. Comparison of bioassay, SPR, and PEIA-ellipsometry. , 2011, Journal of immunological methods.

[5]  Reinskje Talhout,et al.  Understanding binding affinity: a combined isothermal titration calorimetry/molecular dynamics study of the binding of a series of hydrophobically modified benzamidinium chloride inhibitors to trypsin. , 2003, Journal of the American Chemical Society.

[6]  S. Soper,et al.  Effect of linker structure on surface density of aptamer monolayers and their corresponding protein binding efficiency. , 2008, Analytical chemistry.

[7]  D. O'Shannessy,et al.  Determination of kinetic rate and equilibrium binding constants for macromolecular interactions: a critique of the surface plasmon resonance literature. , 1994, Current opinion in biotechnology.

[8]  Y.S. Sun,et al.  Effect of fluorescently labeling protein probes on kinetics of protein-ligand reactions , 2008, 2008 Conference on Lasers and Electro-Optics and 2008 Conference on Quantum Electronics and Laser Science.

[9]  R. Karlsson,et al.  Experimental design for kinetic analysis of protein-protein interactions with surface plasmon resonance biosensors. , 1997, Journal of immunological methods.

[10]  A. Stalcup,et al.  Affinity capillary electrophoresis and isothermal titration calorimetry for the determination of fatty acid binding with beta-cyclodextrin. , 2008, Journal of chromatography. A.

[11]  N. de-los-Santos-Álvarez,et al.  SPR evaluation of binding kinetics and affinity study of modified RNA aptamers towards small molecules. , 2012, Talanta.

[12]  K. Lam,et al.  Oblique-incidence reflectivity difference microscope for label-free high-throughput detection of biochemical reactions in a microarray format. , 2006, Applied optics.

[13]  Gerd Ritter,et al.  Real-Time, label-free monitoring of tumor antigen and serum antibody interactions. , 2004, Journal of biochemical and biophysical methods.

[14]  Albrecht Ott,et al.  Optical study of DNA surface hybridization reveals DNA surface density as a key parameter for microarray hybridization kinetics. , 2007, Biophysical journal.

[15]  Hsiu-Mei Chen,et al.  A biotin-hydrogel-coated quartz crystal microbalance biosensor and applications in immunoassay and peptide-displaying cell detection. , 2009, Analytical biochemistry.

[16]  Alexander W Peterson,et al.  Hybridization of mismatched or partially matched DNA at surfaces. , 2002, Journal of the American Chemical Society.

[17]  J P Landry,et al.  Protein reactions with surface-bound molecular targets detected by oblique-incidence reflectivity difference microscopes. , 2008, Applied optics.

[18]  C. Y. Fong,et al.  An oblique-incidence optical reflectivity difference and LEED study of rare-gas growth on a lattice-mismatched metal substrate , 2004 .

[19]  Xiangdong Zhu Oblique-incidence optical reflectivity difference from a rough film of crystalline material , 2004 .

[20]  D G Myszka,et al.  Advances in surface plasmon resonance biosensor analysis. , 2000, Current opinion in biotechnology.

[21]  R. Gill,et al.  Biosensor Measurement of the Binding of Insulin-like Growth Factors I and II and Their Analogues to the Insulin-like Growth Factor-binding Protein-3* , 1996, The Journal of Biological Chemistry.

[22]  I. Chaiken,et al.  Interpreting complex binding kinetics from optical biosensors: a comparison of analysis by linearization, the integrated rate equation, and numerical integration. , 1995, Analytical biochemistry.