Classification methods for the analysis of LH-PCR data associated with inflammatory bowel disease patients
暂无分享,去创建一个
Huzefa Rangwala | Nuttachat Wisittipanit | Patrick Gillevet | Masoumeh Sikaroodi | Ali Keshavarzian | Ece A. Mutlu | H. Rangwala | A. Keshavarzian | Nuttachat Wisittipanit | P. Gillevet | M. Sikaroodi | E. Mutlu
[1] C. Litchfield,et al. A comparison of DNA profiling techniques for monitoring nutrient impact on microbial community composition during bioremediation of petroleum-contaminated soils. , 2003, Journal of microbiological methods.
[2] M. Pop,et al. Metagenomic Analysis of the Human Distal Gut Microbiome , 2006, Science.
[3] A. Keshavarzian,et al. Dysbiosis in pouchitis: evidence of unique microfloral patterns in pouch inflammation. , 2007, Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association.
[4] R. Knight,et al. The Human Microbiome Project , 2007, Nature.
[5] H. Tilg,et al. Obesity and the microbiota. , 2009, Gastroenterology.
[6] George Karypis,et al. Profile-based direct kernels for remote homology detection and fold recognition , 2005, Bioinform..
[7] K. Field,et al. Microbial community dynamics based on 16S rRNA gene profiles in a Pacific Northwest estuary and its tributaries. , 2005, FEMS microbiology ecology.
[8] M. Vatn,et al. Gut bacterial profile in patients newly diagnosed with treatment-naïve Crohn’s disease , 2012, Clinical and experimental gastroenterology.
[9] G. Gibson,et al. Bacterial biofilms in the human gastrointestinal tract. , 2002, Current issues in intestinal microbiology.
[10] A. Keshavarzian,et al. Quantitative Assessment of the Human Gut Microbiome Using Multitag Pyrosequencing , 2010, Chemistry & biodiversity.
[11] Pat Morin,et al. Output-Sensitive Algorithms for Computing Nearest-Neighbour Decision Boundaries , 2005, Discret. Comput. Geom..
[12] R. Tibshirani,et al. An introduction to the bootstrap , 1993 .
[13] P. Bork,et al. Enterotypes of the human gut microbiome , 2011, Nature.
[14] John C. Wooley,et al. A Primer on Metagenomics , 2010, PLoS Comput. Biol..
[15] Huzefa Rangwala,et al. Profiling Microbial Communities using SSU rRNA Sequence and LH-PCR Data , 2011, BICoB.
[16] Cynthia L Sears,et al. A dynamic partnership: celebrating our gut flora. , 2005, Anaerobe.
[17] Francisco Guarner,et al. The gut microbiota in IBD , 2012, Nature Reviews Gastroenterology &Hepatology.
[18] Larry A. Rendell,et al. A Practical Approach to Feature Selection , 1992, ML.
[19] F. Schluenzen,et al. Structure of Functionally Activated Small Ribosomal Subunit at 3.3 Å Resolution , 2000, Cell.
[20] Chih-Jen Lin,et al. LIBSVM: A library for support vector machines , 2011, TIST.
[21] M. Schutter,et al. Use of Length Heterogeneity PCR and Fatty Acid Methyl Ester Profiles To Characterize Microbial Communities in Soil , 2000, Applied and Environmental Microbiology.
[22] Bernhard E. Boser,et al. A training algorithm for optimal margin classifiers , 1992, COLT '92.
[23] Huzefa Rangwala,et al. Analysis of Microbiome Data across Inflammatory Bowel Disease Patients , 2011, 2011 10th International Conference on Machine Learning and Applications and Workshops.
[24] John C. Wooley,et al. Metagenomics: Facts and Artifacts, and Computational Challenges , 2010, Journal of Computer Science and Technology.
[25] K. Guillemin,et al. We know you are in there: conversing with the indigenous gut microbiota. , 2007, Research in microbiology.
[26] D. Savage. Microbial ecology of the gastrointestinal tract. , 1977, Annual review of microbiology.
[27] C. Manichanh,et al. Reduced diversity of faecal microbiota in Crohn’s disease revealed by a metagenomic approach , 2005, Gut.
[28] S. Carding,et al. Inflammatory bowel disease: cause and immunobiology , 2007, The Lancet.
[29] G. Narasimhan,et al. An eco-informatics tool for microbial community studies: supervised classification of Amplicon Length Heterogeneity (ALH) profiles of 16S rRNA. , 2006, Journal of microbiological methods.
[30] R. Ley,et al. Ecological and Evolutionary Forces Shaping Microbial Diversity in the Human Intestine , 2006, Cell.
[31] P. Bork,et al. A human gut microbial gene catalogue established by metagenomic sequencing , 2010, Nature.
[32] Tom Fawcett,et al. An introduction to ROC analysis , 2006, Pattern Recognit. Lett..
[33] O. Eremin,et al. Inflammatory bowel disease: dysfunction of GALT and gut bacterial flora (II). , 2003, The surgeon : journal of the Royal Colleges of Surgeons of Edinburgh and Ireland.
[34] John A. Swets,et al. Signal Detection Theory and ROC Analysis in Psychology and Diagnostics: Collected Papers , 1996 .
[35] Mihai Pop,et al. Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples , 2009, PLoS Comput. Biol..
[36] Timothy L. Tickle,et al. Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment , 2012, Genome Biology.