Light-Driven Changes in Energy Metabolism Directly Entrain the Cyanobacterial Circadian Oscillator

Cyanobacterial circadian clock components are directly coupled to the metabolic status of the cell through interactions with adenine nucleotides. Circadian clocks are self-sustained biological oscillators that can be entrained by environmental cues. Although this phenomenon has been studied in many organisms, the molecular mechanisms of entrainment remain unclear. Three cyanobacterial proteins and adenosine triphosphate (ATP) are sufficient to generate oscillations in phosphorylation in vitro. We show that changes in illumination that induce a phase shift in cultured cyanobacteria also cause changes in the ratio of ATP to adenosine diphosphate (ADP). When these nucleotide changes are simulated in the in vitro oscillator, they cause phase shifts similar to those observed in vivo. Physiological concentrations of ADP inhibit kinase activity in the oscillator, and a mathematical model constrained by data shows that this effect is sufficient to quantitatively explain entrainment of the cyanobacterial circadian clock.

[1]  Y Sakaki,et al.  Entrainment of the circadian clock in the liver by feeding. , 2001, Science.

[2]  S. Golden,et al.  LdpA: a component of the circadian clock senses redox state of the cell , 2005, The EMBO journal.

[3]  Michael J Rust,et al.  References and Notes Supporting Online Material Materials and Methods Figs. S1 to S8 Tables S1 to S3 References Ordered Phosphorylation Governs Oscillation of a Three-protein Circadian Clock , 2022 .

[4]  J. Aschoff,et al.  Exogenous and endogenous components in circadian rhythms. , 1960, Cold Spring Harbor symposia on quantitative biology.

[5]  S. Golden,et al.  The KaiA protein of the cyanobacterial circadian oscillator is modulated by a redox-active cofactor , 2010, Proceedings of the National Academy of Sciences.

[6]  Tetsuya Mori,et al.  Intermolecular associations determine the dynamics of the circadian KaiABC oscillator , 2010, Proceedings of the National Academy of Sciences.

[7]  T. Kondo,et al.  Reconstitution of Circadian Oscillation of Cyanobacterial KaiC Phosphorylation in Vitro , 2005, Science.

[8]  S. Golden,et al.  ldpA Encodes an Iron-Sulfur Protein Involved in Light-Dependent Modulation of the Circadian Period in the Cyanobacterium Synechococcuselongatus PCC 7942 , 2003, Journal of bacteriology.

[9]  D. E. Atkinson The energy charge of the adenylate pool as a regulatory parameter. Interaction with feedback modifiers. , 1968, Biochemistry.

[10]  Toshifumi Takao,et al.  A sequential program of dual phosphorylation of KaiC as a basis for circadian rhythm in cyanobacteria , 2007, The EMBO journal.

[11]  J. Gibson,et al.  CO2 fixation and its regulation in Anacystis nidulans (Synechococcus) , 2004, Archives of Microbiology.

[12]  Carl Hirschie Johnson,et al.  Circadian rhythms of superhelical status of DNA in cyanobacteria , 2007, Proceedings of the National Academy of Sciences.

[13]  H. Lubberding,et al.  The ATP level in the thermophilic cyanobacterium Synechococcus 6716 during light‐dark transition and in the presence of some specific inhibitors , 1984 .

[14]  Takao Kondo,et al.  KaiA-stimulated KaiC phosphorylation in circadian timing loops in cyanobacteria , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[15]  S. Scherer,et al.  Interaction of photosynthesis, respiration and nitrogen fixation in cyanobacteria , 1988, Photosynthesis Research.

[16]  Martin Egli,et al.  Visualizing a circadian clock protein: crystal structure of KaiC and functional insights. , 2004, Molecular cell.

[17]  Martin Egli,et al.  Identification of key phosphorylation sites in the circadian clock protein KaiC by crystallographic and mutagenetic analyses. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[18]  S. Golden,et al.  CikA, a bacteriophytochrome that resets the cyanobacterial circadian clock. , 2000, Science.

[19]  R. Castenholz,et al.  Internal pH and ATP-ADP pools in the cyanobacterium Synechococcus sp. during exposure to growth-inhibiting low pH , 1982, Journal of bacteriology.

[20]  J. Waterbury,et al.  Generic assignments, strain histories, and properties of pure cultures of cyanobacteria , 1979 .

[21]  W. Simonis,et al.  Effects of light, temperature, pH, and inhibitors on the ATP level of the blue-green alga Anacystic nidulans , 1974, Planta.

[22]  J. Shelton,et al.  Application of bioluminescence to the study of circadian rhythms in cyanobacteria. , 2000, Methods in enzymology.

[23]  S. Golden,et al.  Quinone sensing by the circadian input kinase of the cyanobacterial circadian clock , 2006, Proceedings of the National Academy of Sciences.

[24]  S. Panda,et al.  AMPK Regulates the Circadian Clock by Cryptochrome Phosphorylation and Degradation , 2009, Science.

[25]  T. Kondo,et al.  Cyanobacterial daily life with Kai-based circadian and diurnal genome-wide transcriptional control in Synechococcus elongatus , 2009, Proceedings of the National Academy of Sciences.

[26]  T Roenneberg,et al.  Twilight Times: Light and the Circadian System , 1997, Photochemistry and photobiology.